View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10881_low_2 (Length: 425)

Name: NF10881_low_2
Description: NF10881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10881_low_2
NF10881_low_2
[»] chr2 (1 HSPs)
chr2 (9-425)||(8262627-8263043)


Alignment Details
Target: chr2 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 9 - 425
Target Start/End: Complemental strand, 8263043 - 8262627
Alignment:
Q  9 gatgaataaaatatataaggaaagcaaaatctgagtgaatcatgcatgtatatactttgatttcatgtgagcttccttttatggattaaaaccaaacact 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  8263043 gatgaataaaatatataaggaaagcaaaatctgagtgaatcatgcatgtatatactttgatttcatgtgagcttccttttatagattaaaaccaaacact 8262944  T
Q  109 gttttcttttttgaactaactccacttataggtatcattgcctttgaatgtggaagaaagtggtataacctatgatcatattcatgaaccccagtttttg 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8262943 gttttcttttttgaactaactccacttataggtatcattgcctttgaatgtggaagaaagtggtataacctatgatcatattcatgaaccccagtttttg 8262844  T
Q  209 cacaaaaaaggcatgaaaaatcaaaactccttccaaatataaactgattcaatcaatgaaagcactatattcacatcacaccaaccacaaacttaacttt 308  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8262843 cacataaaaggcatgaaaaatcaaaactccttccaaatataaactgattcaatcaatgaaagcactatattcacatcacaccaaccacaaacttaacttt 8262744  T
Q  309 ccaaaagctatactattttgaatttcaaatgcggttggtaacaaacaaaaccacttatcctgtgaactcataaatatagggacatgttcaaagctaaact 408  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  8262743 ccaaaagctatactattttgaatttcaaatgtggttggtaacaaacaaaaccacttatcctgtgaactcataaatataggaacatgttcaaagctaaact 8262644  T
Q  409 caacatcttgtctcact 425  Q
    |||||||||||||||||    
T  8262643 caacatcttgtctcact 8262627  T

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