View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10881_low_20 (Length: 250)

Name: NF10881_low_20
Description: NF10881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10881_low_20
NF10881_low_20
[»] chr4 (12 HSPs)
chr4 (98-236)||(33010882-33011020)
chr4 (1-91)||(11334323-11334414)
chr4 (46-101)||(48091135-48091190)
chr4 (46-94)||(199266-199314)
chr4 (46-92)||(388753-388799)
chr4 (46-92)||(3220517-3220563)
chr4 (46-92)||(35428240-35428286)
chr4 (50-92)||(39862887-39862929)
chr4 (46-84)||(52869455-52869493)
chr4 (50-95)||(33569717-33569762)
chr4 (1-37)||(33758081-33758117)
chr4 (1-37)||(37275144-37275180)
[»] chr2 (9 HSPs)
chr2 (1-92)||(43743796-43743888)
chr2 (46-84)||(39477365-39477403)
chr2 (46-95)||(9224263-9224312)
chr2 (46-95)||(18950535-18950584)
chr2 (46-92)||(4387000-4387046)
chr2 (46-92)||(12206788-12206834)
chr2 (46-92)||(16571118-16571164)
chr2 (46-79)||(14565214-14565247)
chr2 (50-99)||(20244215-20244264)
[»] chr6 (3 HSPs)
chr6 (1-92)||(32079019-32079112)
chr6 (46-92)||(33668221-33668267)
chr6 (46-94)||(13936680-13936728)
[»] chr8 (11 HSPs)
chr8 (46-93)||(35237258-35237305)
chr8 (46-92)||(11999120-11999166)
chr8 (46-95)||(4375032-4375081)
chr8 (46-93)||(16889194-16889241)
chr8 (46-92)||(7818474-7818520)
chr8 (46-84)||(11998464-11998502)
chr8 (46-92)||(33114228-33114274)
chr8 (46-92)||(39852154-39852200)
chr8 (46-92)||(43433811-43433857)
chr8 (46-92)||(43591656-43591702)
chr8 (48-92)||(41761799-41761843)
[»] chr5 (4 HSPs)
chr5 (46-93)||(39149471-39149518)
chr5 (46-94)||(3957498-3957546)
chr5 (46-92)||(28076009-28076055)
chr5 (1-37)||(2458310-2458346)
[»] chr7 (9 HSPs)
chr7 (46-92)||(36682835-36682881)
chr7 (47-92)||(23283883-23283928)
chr7 (46-99)||(27855559-27855612)
chr7 (50-92)||(85093-85135)
chr7 (46-79)||(4270189-4270222)
chr7 (46-87)||(4895122-4895163)
chr7 (46-87)||(19816932-19816973)
chr7 (52-92)||(19767878-19767918)
chr7 (46-94)||(30422783-30422830)
[»] scaffold0039 (1 HSPs)
scaffold0039 (46-94)||(90613-90661)
[»] chr3 (6 HSPs)
chr3 (46-93)||(3944894-3944941)
chr3 (46-84)||(38279417-38279455)
chr3 (46-92)||(50687748-50687794)
chr3 (50-92)||(53269392-53269434)
chr3 (1-37)||(21811935-21811971)
chr3 (1-37)||(37105033-37105069)
[»] chr1 (1 HSPs)
chr1 (46-86)||(43352828-43352868)


Alignment Details
Target: chr4 (Bit Score: 139; Significance: 8e-73; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 98 - 236
Target Start/End: Original strand, 33010882 - 33011020
Alignment:
Q  98 atagtacacatatcatgtcagtagtcagtcaagtcagttgagaaagcgagaattgtgccgtgagaccgaaaacctttgaggtattctcaacatggcggaa 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33010882 atagtacacatatcatgtcagtagtcagtcaagtcagttgagaaagcgagaattgtgccgtgagaccgaaaacctttgaggtattctcaacatggcggaa 33010981  T
Q  198 aataacaaacctgaagaagaacccttcttcctcaccctt 236  Q
    |||||||||||||||||||||||||||||||||||||||    
T  33010982 aataacaaacctgaagaagaacccttcttcctcaccctt 33011020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 11334414 - 11334323
Alignment:
Q  1 tatagtaagatcagtgttcccttttaatctgatggttnnnnnnn-gtttcccatggtgggaaatgattcacctttcccatatgaaatgtcac 91  Q
    ||||||||||| |||||||||||||||||| ||||||        ||||||||| |||||||| ||||||||||||| ||||||||||||||    
T  11334414 tatagtaagattagtgttcccttttaatctaatggttaaaaaaaagtttcccatagtgggaaaggattcacctttcctatatgaaatgtcac 11334323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 101
Target Start/End: Original strand, 48091135 - 48091190
Alignment:
Q  46 tttcccatggtgggaaatgattcacctttcccatatgaaatgtcaccataaaatag 101  Q
    ||||||||||||||||| |||| ||||||||||||||||||| ||||  |||||||    
T  48091135 tttcccatggtgggaaaagattaacctttcccatatgaaatgccacctaaaaatag 48091190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 94
Target Start/End: Original strand, 199266 - 199314
Alignment:
Q  46 tttcccatggtgggaaatgattcacctttcccatatgaaatgtcaccat 94  Q
    ||||||||||||||||| |||| ||||||||||| ||||||| ||||||    
T  199266 tttcccatggtgggaaaggattaacctttcccatgtgaaatgccaccat 199314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 92
Target Start/End: Complemental strand, 388799 - 388753
Alignment:
Q  46 tttcccatggtgggaaatgattcacctttcccatatgaaatgtcacc 92  Q
    ||||||||||||||||| |||| ||||||||||| ||||||| ||||    
T  388799 tttcccatggtgggaaaggattaacctttcccatgtgaaatgccacc 388753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 92
Target Start/End: Complemental strand, 3220563 - 3220517
Alignment:
Q  46 tttcccatggtgggaaatgattcacctttcccatatgaaatgtcacc 92  Q
    ||||| ||| ||||||| |||||||||||||||||| ||||||||||    
T  3220563 tttcctatgatgggaaaggattcacctttcccatataaaatgtcacc 3220517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 92
Target Start/End: Original strand, 35428240 - 35428286
Alignment:
Q  46 tttcccatggtgggaaatgattcacctttcccatatgaaatgtcacc 92  Q
    ||||||||||||||||| |||| ||||||||||| ||||||| ||||    
T  35428240 tttcccatggtgggaaaggattaacctttcccatctgaaatgccacc 35428286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 92
Target Start/End: Original strand, 39862887 - 39862929
Alignment:
Q  50 ccatggtgggaaatgattcacctttcccatatgaaatgtcacc 92  Q
    ||||||||||||| |||||  ||||||||||||||||||||||    
T  39862887 ccatggtgggaaaagattcctctttcccatatgaaatgtcacc 39862929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 84
Target Start/End: Complemental strand, 52869493 - 52869455
Alignment:
Q  46 tttcccatggtgggaaatgattcacctttcccatatgaa 84  Q
    ||||||||||||||||| |||||||||||||||| ||||    
T  52869493 tttcccatggtgggaaaggattcacctttcccatgtgaa 52869455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 95
Target Start/End: Complemental strand, 33569762 - 33569717
Alignment:
Q  50 ccatggtgggaaatgattcacctttcccatatgaaatgtcaccata 95  Q
    ||||||||||||| |||| ||||||||||| ||||||| |||||||    
T  33569762 ccatggtgggaaaggattgacctttcccatgtgaaatgccaccata 33569717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 33758081 - 33758117
Alignment:
Q  1 tatagtaagatcagtgttcccttttaatctgatggtt 37  Q
    |||| ||| ||||||||||||||||||||||||||||    
T  33758081 tataataatatcagtgttcccttttaatctgatggtt 33758117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 37275180 - 37275144
Alignment:
Q  1 tatagtaagatcagtgttcccttttaatctgatggtt 37  Q
    ||||||||||||| |||||||||||||||| ||||||    
T  37275180 tatagtaagatcaatgttcccttttaatctaatggtt 37275144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 43743796 - 43743888
Alignment:
Q  1 tatagtaagatcagtgttcccttttaatctgatggttnnnnnnn-gtttcccatggtgggaaatgattcacctttcccatatgaaatgtcacc 92  Q
    ||||||||||||| |||||||||| ||||||||||||        |||||||||||||||||| |||||||||||||||| ||||||||||||    
T  43743796 tatagtaagatcaatgttccctttaaatctgatggttaaaaaaaagtttcccatggtgggaaaggattcacctttcccatgtgaaatgtcacc 43743888  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 46 - 84
Target Start/End: Original strand, 39477365 - 39477403
Alignment:
Q  46 tttcccatggtgggaaatgattcacctttcccatatgaa 84  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  39477365 tttcccatggtgggaaatgattaacctttcccatatgaa 39477403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 95
Target Start/End: Complemental strand, 9224312 - 9224263
Alignment:
Q  46 tttcccatggtgggaaatgattcacctttcccatatgaaatgtcaccata 95  Q
    ||||||||||||||||| |||| ||||||||||| ||||||| |||||||    
T  9224312 tttcccatggtgggaaaggattaacctttcccatgtgaaatgccaccata 9224263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 95
Target Start/End: Original strand, 18950535 - 18950584
Alignment:
Q  46 tttcccatggtgggaaatgattcacctttcccatatgaaatgtcaccata 95  Q
    ||||||||||||||||| |||| |||||| |||||||||||| |||||||    
T  18950535 tttcccatggtgggaaaggattaaccttttccatatgaaatgccaccata 18950584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 92
Target Start/End: Original strand, 4387000 - 4387046
Alignment:
Q  46 tttcccatggtgggaaatgattcacctttcccatatgaaatgtcacc 92  Q
    ||||||||||||||||| |||| ||||||||||| ||||||| ||||    
T  4387000 tttcccatggtgggaaaggattaacctttcccatgtgaaatgccacc 4387046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 92
Target Start/End: Complemental strand, 12206834 - 12206788
Alignment:
Q  46 tttcccatggtgggaaatgattcacctttcccatatgaaatgtcacc 92  Q
    |||| |||||||||||| |||| ||||||||||| ||||||||||||    
T  12206834 tttctcatggtgggaaaggattaacctttcccatgtgaaatgtcacc 12206788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 92
Target Start/End: Complemental strand, 16571164 - 16571118
Alignment:
Q  46 tttcccatggtgggaaatgattcacctttcccatatgaaatgtcacc 92  Q
    ||||||||||||||||| |||| ||||||||||| ||||||| ||||    
T  16571164 tttcccatggtgggaaaggattaacctttcccatgtgaaatggcacc 16571118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 79
Target Start/End: Original strand, 14565214 - 14565247
Alignment:
Q  46 tttcccatggtgggaaatgattcacctttcccat 79  Q
    ||||||||||||||||| ||||||||||||||||    
T  14565214 tttcccatggtgggaaaggattcacctttcccat 14565247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 99
Target Start/End: Original strand, 20244215 - 20244264
Alignment:
Q  50 ccatggtgggaaatgattcacctttcccatatgaaatgtcaccataaaat 99  Q
    ||||||||||||| |||| ||||||||||| ||||||| |||||| ||||    
T  20244215 ccatggtgggaaaggattaacctttcccatgtgaaatgccaccatcaaat 20244264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 32079112 - 32079019
Alignment:
Q  1 tatagtaagatcagtgttcccttttaatctgatggtt--nnnnnnngtttcccatggtgggaaatgattcacctttcccatatgaaatgtcacc 92  Q
    |||||||||||||||||||||||||||||||||||||         ||||  |||||||| ||| |||||||||||||||| ||||||| ||||    
T  32079112 tatagtaagatcagtgttcccttttaatctgatggttaaaaaaaaagtttttcatggtggaaaaggattcacctttcccatgtgaaatgccacc 32079019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 46 - 92
Target Start/End: Complemental strand, 33668267 - 33668221
Alignment:
Q  46 tttcccatggtgggaaatgattcacctttcccatatgaaatgtcacc 92  Q
    |||||||||||||||||||||| ||||||||||| ||||||| ||||    
T  33668267 tttcccatggtgggaaatgattaacctttcccatgtgaaatgccacc 33668221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 94
Target Start/End: Original strand, 13936680 - 13936728
Alignment:
Q  46 tttcccatggtgggaaatgattcacctttcccatatgaaatgtcaccat 94  Q
    ||||||||||||||||| |||| ||||||||||| ||||||| ||||||    
T  13936680 tttcccatggtgggaaaggattaacctttcccatgtgaaatggcaccat 13936728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 93
Target Start/End: Complemental strand, 35237305 - 35237258
Alignment:
Q  46 tttcccatggtgggaaatgattcacctttcccatatgaaatgtcacca 93  Q
    ||||||||||||||||| |||| ||||||||||| |||||||||||||    
T  35237305 tttcccatggtgggaaaggattaacctttcccatgtgaaatgtcacca 35237258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 46 - 92
Target Start/End: Original strand, 11999120 - 11999166
Alignment:
Q  46 tttcccatggtgggaaatgattcacctttcccatatgaaatgtcacc 92  Q
    |||||||||||||||||||||| ||||||||||| ||||||| ||||    
T  11999120 tttcccatggtgggaaatgattaacctttcccatgtgaaatgccacc 11999166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 95
Target Start/End: Original strand, 4375032 - 4375081
Alignment:
Q  46 tttcccatggtgggaaatgattcacctttcccatatgaaatgtcaccata 95  Q
    |||| |||||||| |||||||||| ||||||||||||||||| |||||||    
T  4375032 tttctcatggtggaaaatgattcatctttcccatatgaaatgccaccata 4375081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 93
Target Start/End: Complemental strand, 16889241 - 16889194
Alignment:
Q  46 tttcccatggtgggaaatgattcacctttcccatatgaaatgtcacca 93  Q
    ||||||||||||||||| |||| ||||||||||| ||||||| |||||    
T  16889241 tttcccatggtgggaaaagattaacctttcccatgtgaaatgccacca 16889194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 92
Target Start/End: Complemental strand, 7818520 - 7818474
Alignment:
Q  46 tttcccatggtgggaaatgattcacctttcccatatgaaatgtcacc 92  Q
    ||||||||||||||||| |||| ||||||||||| ||||||| ||||    
T  7818520 tttcccatggtgggaaaggattaacctttcccatgtgaaatgccacc 7818474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 84
Target Start/End: Complemental strand, 11998502 - 11998464
Alignment:
Q  46 tttcccatggtgggaaatgattcacctttcccatatgaa 84  Q
    |||||||||||||||||||||| ||||||||||| ||||    
T  11998502 tttcccatggtgggaaatgattaacctttcccatgtgaa 11998464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 92
Target Start/End: Original strand, 33114228 - 33114274
Alignment:
Q  46 tttcccatggtgggaaatgattcacctttcccatatgaaatgtcacc 92  Q
    ||||||||||||||||| |||| ||||||||||| ||||||| ||||    
T  33114228 tttcccatggtgggaaaggattaacctttcccatgtgaaatgccacc 33114274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 92
Target Start/End: Complemental strand, 39852200 - 39852154
Alignment:
Q  46 tttcccatggtgggaaatgattcacctttcccatatgaaatgtcacc 92  Q
    ||||||||||||||||| |||| ||||||||||| ||||||| ||||    
T  39852200 tttcccatggtgggaaaggattaacctttcccatttgaaatgccacc 39852154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 92
Target Start/End: Complemental strand, 43433857 - 43433811
Alignment:
Q  46 tttcccatggtgggaaatgattcacctttcccatatgaaatgtcacc 92  Q
    ||||||||||||||||||||||| |||||||||| | ||||| ||||    
T  43433857 tttcccatggtgggaaatgattcccctttcccatgttaaatgccacc 43433811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 92
Target Start/End: Original strand, 43591656 - 43591702
Alignment:
Q  46 tttcccatggtgggaaatgattcacctttcccatatgaaatgtcacc 92  Q
    |||||||||||||||||| ||| ||||||||||| ||||||| ||||    
T  43591656 tttcccatggtgggaaataattaacctttcccatgtgaaatgacacc 43591702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 92
Target Start/End: Complemental strand, 41761843 - 41761799
Alignment:
Q  48 tcccatggtgggaaatgattcacctttcccatatgaaatgtcacc 92  Q
    ||||||||||||||| |||| ||||||||||| ||||||| ||||    
T  41761843 tcccatggtgggaaaggattaacctttcccatgtgaaatgccacc 41761799  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 93
Target Start/End: Original strand, 39149471 - 39149518
Alignment:
Q  46 tttcccatggtgggaaatgattcacctttcccatatgaaatgtcacca 93  Q
    ||||||||||||||||| |||||||||||||||| ||||||| |||||    
T  39149471 tttcccatggtgggaaaggattcacctttcccatgtgaaatgccacca 39149518  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 94
Target Start/End: Complemental strand, 3957546 - 3957498
Alignment:
Q  46 tttcccatggtgggaaatgattcacctttcccatatgaaatgtcaccat 94  Q
    ||||||||||||||||| |||| ||||||||||| ||||||| ||||||    
T  3957546 tttcccatggtgggaaaggattaacctttcccatgtgaaatgccaccat 3957498  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 92
Target Start/End: Original strand, 28076009 - 28076055
Alignment:
Q  46 tttcccatggtgggaaatgattcacctttcccatatgaaatgtcacc 92  Q
    ||||||||||||| |||||||| |||||| |||| ||||||||||||    
T  28076009 tttcccatggtggaaaatgattaaccttttccatgtgaaatgtcacc 28076055  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 2458310 - 2458346
Alignment:
Q  1 tatagtaagatcagtgttcccttttaatctgatggtt 37  Q
    ||||||||||||| |||||||||||||||| ||||||    
T  2458310 tatagtaagatcaatgttcccttttaatctaatggtt 2458346  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 46 - 92
Target Start/End: Complemental strand, 36682881 - 36682835
Alignment:
Q  46 tttcccatggtgggaaatgattcacctttcccatatgaaatgtcacc 92  Q
    |||||||||||||||||||||| ||||||||||| ||||||| ||||    
T  36682881 tttcccatggtgggaaatgattaacctttcccatgtgaaatgccacc 36682835  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 92
Target Start/End: Original strand, 23283883 - 23283928
Alignment:
Q  47 ttcccatggtgggaaatgattcacctttcccatatgaaatgtcacc 92  Q
    |||||||||||||||| ||||| |||||||||| ||||||||||||    
T  23283883 ttcccatggtgggaaaggattcccctttcccatgtgaaatgtcacc 23283928  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 99
Target Start/End: Complemental strand, 27855612 - 27855559
Alignment:
Q  46 tttcccatggtgggaaatgattcacctttcccatatgaaatgtcaccataaaat 99  Q
    |||| ||||||||||||||||| ||||||||||| ||||||| |||| ||||||    
T  27855612 tttctcatggtgggaaatgattaacctttcccatgtgaaatgccaccttaaaat 27855559  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 92
Target Start/End: Original strand, 85093 - 85135
Alignment:
Q  50 ccatggtgggaaatgattcacctttcccatatgaaatgtcacc 92  Q
    ||||||||||||| |||||||||||||||| ||||||| ||||    
T  85093 ccatggtgggaaaggattcacctttcccatgtgaaatgccacc 85135  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 79
Target Start/End: Complemental strand, 4270222 - 4270189
Alignment:
Q  46 tttcccatggtgggaaatgattcacctttcccat 79  Q
    ||||||||||||||||| ||||||||||||||||    
T  4270222 tttcccatggtgggaaaggattcacctttcccat 4270189  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 87
Target Start/End: Original strand, 4895122 - 4895163
Alignment:
Q  46 tttcccatggtgggaaatgattcacctttcccatatgaaatg 87  Q
    ||||||||||||| |||||||| ||||||||||| |||||||    
T  4895122 tttcccatggtggaaaatgattaacctttcccatgtgaaatg 4895163  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 87
Target Start/End: Original strand, 19816932 - 19816973
Alignment:
Q  46 tttcccatggtgggaaatgattcacctttcccatatgaaatg 87  Q
    ||||||||||||| ||| |||| |||||||||||||||||||    
T  19816932 tttcccatggtggaaaaggattaacctttcccatatgaaatg 19816973  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 92
Target Start/End: Complemental strand, 19767918 - 19767878
Alignment:
Q  52 atggtgggaaatgattcacctttcccatatgaaatgtcacc 92  Q
    ||||||||||| |||| | ||||||||||||||||||||||    
T  19767918 atggtgggaaaggattaaactttcccatatgaaatgtcacc 19767878  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 94
Target Start/End: Original strand, 30422783 - 30422830
Alignment:
Q  46 tttcccatggtgggaaatgattcacctttcccatatgaaatgtcaccat 94  Q
    |||| |||||||||||| |||||||||||||||| ||||||| ||||||    
T  30422783 tttctcatggtgggaaa-gattcacctttcccatgtgaaatgccaccat 30422830  T

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Target: scaffold0039 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 94
Target Start/End: Complemental strand, 90661 - 90613
Alignment:
Q  46 tttcccatggtgggaaatgattcacctttcccatatgaaatgtcaccat 94  Q
    ||||| ||||||| |||||||||||||||||||| ||||||| ||||||    
T  90661 tttcctatggtggaaaatgattcacctttcccatgtgaaatgccaccat 90613  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 93
Target Start/End: Complemental strand, 3944941 - 3944894
Alignment:
Q  46 tttcccatggtgggaaatgattcacctttcccatatgaaatgtcacca 93  Q
    ||||||||||||||||| |||| ||||||||||| ||||||| |||||    
T  3944941 tttcccatggtgggaaaggattaacctttcccatgtgaaatgccacca 3944894  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 84
Target Start/End: Complemental strand, 38279455 - 38279417
Alignment:
Q  46 tttcccatggtgggaaatgattcacctttcccatatgaa 84  Q
    ||||||||||||||||| |||||||||||||||| ||||    
T  38279455 tttcccatggtgggaaaggattcacctttcccatgtgaa 38279417  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 92
Target Start/End: Original strand, 50687748 - 50687794
Alignment:
Q  46 tttcccatggtgggaaatgattcacctttcccatatgaaatgtcacc 92  Q
    |||||||||||||||||  ||| ||||||||||| ||||||||||||    
T  50687748 tttcccatggtgggaaagaattaacctttcccatgtgaaatgtcacc 50687794  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 92
Target Start/End: Original strand, 53269392 - 53269434
Alignment:
Q  50 ccatggtgggaaatgattcacctttcccatatgaaatgtcacc 92  Q
    ||||||||||||| |||| ||||||||||| ||||||||||||    
T  53269392 ccatggtgggaaaggattaacctttcccatgtgaaatgtcacc 53269434  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 21811971 - 21811935
Alignment:
Q  1 tatagtaagatcagtgttcccttttaatctgatggtt 37  Q
    ||||||||||||| |||||||||||||||| ||||||    
T  21811971 tatagtaagatcaatgttcccttttaatctaatggtt 21811935  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 37105033 - 37105069
Alignment:
Q  1 tatagtaagatcagtgttcccttttaatctgatggtt 37  Q
    ||||||||||||| |||||||||||||||| ||||||    
T  37105033 tatagtaagatcaatgttcccttttaatctaatggtt 37105069  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 86
Target Start/End: Original strand, 43352828 - 43352868
Alignment:
Q  46 tttcccatggtgggaaatgattcacctttcccatatgaaat 86  Q
    ||||| ||||||| ||| |||||||||||||||||||||||    
T  43352828 tttcctatggtggaaaaggattcacctttcccatatgaaat 43352868  T

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