View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10881_low_21 (Length: 250)
Name: NF10881_low_21
Description: NF10881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10881_low_21 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 10 - 250
Target Start/End: Complemental strand, 40405089 - 40404852
Alignment:
| Q |
10 |
agaagaaccacataacagcattgatagttaaaaagaaggacaagaaaaatggcatgtattcaacgctccttgaccttatgactttgctctgcatggaagg |
109 |
Q |
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| T |
40405089 |
agaagaaccacataacagcattgatagttaaaaagaaggacaagaaaaatggcatgtattcaacgctccttgaccttatgactttgctctgcatggaagg |
40404990 |
T |
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| Q |
110 |
aaatcatcataaaaaatatttatttaattatcatcatttgctcatttaattgggaaaaaataaattaagaatacttacaatgacgaagagaggtgcagca |
209 |
Q |
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||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40404989 |
aaatcatcataaaaattatttatttaatta---tcatttgctcatttaattgggaaaaaataaattaagaatacttacaatgacgaagagaggtgcagca |
40404893 |
T |
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| Q |
210 |
aatacacttatgttgaaaacaaggcaaatccatccaatgat |
250 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
40404892 |
aatacacttatgttgaaaacaaggcaaatccatccaatgat |
40404852 |
T |
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