View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10881_low_22 (Length: 248)
Name: NF10881_low_22
Description: NF10881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10881_low_22 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 18 - 235
Target Start/End: Original strand, 10559575 - 10559793
Alignment:
| Q |
18 |
agtttattgttctaaattatgtcctgtgttacctaagttgttgcttaaatt-catagtttatgtggaaaggcctggcttcatatgtaatgcataattcaa |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10559575 |
agtttattgttctaaattatgtcctgtgttacctaagttgttgcttaaatttcatagtttatgtggaaaggcctggcttcatatgtaatgcataattcaa |
10559674 |
T |
|
| Q |
117 |
gataataaagtttgtggttgtagctattttgaatgataccacctacactttaggttagagagttaccttataataaatcagctttccttatacacatata |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10559675 |
gataataaagtttgtggttgtagctattttgaatgataccacctacactttaggttagagagttaccttataataaatcagctttccttatacacatata |
10559774 |
T |
|
| Q |
217 |
actctaccataactcatct |
235 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
10559775 |
actctaccataactcatct |
10559793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 10560554 - 10560592
Alignment:
| Q |
18 |
agtttattgttctaaattatgtcctgtgttacctaagtt |
56 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
10560554 |
agtttattgttttaaattatgtcctgtgttacctaagtt |
10560592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University