View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10881_low_26 (Length: 241)
Name: NF10881_low_26
Description: NF10881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10881_low_26 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 52 - 241
Target Start/End: Original strand, 2354370 - 2354559
Alignment:
| Q |
52 |
attgggagcaggccttaaatttggccaaaacaaaatataaagacgcaaaaggacctcattggttattcaagttttggcttttgagggaaccaaaagttct |
151 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2354370 |
attgggagcaggccttaaatttggccaaaacaaaatataaagacgcaaaaggacctcattggttattcaagttttggcttttgagggaaccaaaagttct |
2354469 |
T |
|
| Q |
152 |
ggcgnnnnnnnnnnnnnnnnnnnnctgtccacacccatattagcttcttaattactagttcatcacaaaattaaaaaggagaatatcctt |
241 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2354470 |
ggcgttttcttttgttttatttttctgtccacacccatattagcttcttaattactagttcatcacaaaattaaaaaggagaatatcctt |
2354559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University