View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10881_low_27 (Length: 241)
Name: NF10881_low_27
Description: NF10881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10881_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 3 - 223
Target Start/End: Original strand, 11334451 - 11334668
Alignment:
| Q |
3 |
ctgtatagtctttcttcatcaacctcttagtgtcattcacggcttagctttcactttcattgtcttcaacctccgtctatggaattttatttcaataaag |
102 |
Q |
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| T |
11334451 |
ctgtatattctttcttcatcaacctctgagtgtcattcacggcttagctttcactttcattgtcttcaacctccgtctatggaattttatttcaat---g |
11334547 |
T |
|
| Q |
103 |
aagaacaataaccaataaatcataaaaataacaaattaagggtaccgttattcatacttgctcaacatctcgatgaacgagttcatggcatttaaaattg |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
11334548 |
aagaacaataaccaataaatcataaaaataacaaattaagggtaccgttattcatacttgctcaacatctcgatgaacaagttcatggcatttaaaattg |
11334647 |
T |
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| Q |
203 |
gtttctgcagcatgctctaaa |
223 |
Q |
| |
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|||| |||||||||||||||| |
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| T |
11334648 |
gtttttgcagcatgctctaaa |
11334668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 4 - 223
Target Start/End: Complemental strand, 43743783 - 43743564
Alignment:
| Q |
4 |
tgtatagtctttcttcatcaacctcttagtgtcattcacggcttagctttcactttcattgtcttcaacctccgtctatggaattttatttcaataaaga |
103 |
Q |
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|||||| |||||||||||||| ||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||| |||| |
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| T |
43743783 |
tgtatattctttcttcatcaagctcttagtgtcattcacggcttaactttcacttttattgccttcaacctccgtctatggaattttatttcaatgaaga |
43743684 |
T |
|
| Q |
104 |
agaacaataaccaataaatcataaaaataacaaattaagggtaccgttattcatacttgctcaacatctcgatgaacgagttcatggcatttaaaattgg |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
43743683 |
agaacaataaccaataaatcataaaaataacaaattaagggtaccgttattcatacttgctcaacatctcgatgaacaagttcatggcatttaaaattgg |
43743584 |
T |
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| Q |
204 |
tttctgcagcatgctctaaa |
223 |
Q |
| |
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||| || ||||||||||||| |
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| T |
43743583 |
tttttgtagcatgctctaaa |
43743564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 4 - 223
Target Start/End: Original strand, 32079123 - 32079341
Alignment:
| Q |
4 |
tgtatagtctttcttcatcaacctcttagtgtcattcacggcttagctttcactttcattgtcttcaacctccgtctatggaattttatttcaataaaga |
103 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | || |
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| T |
32079123 |
tgtatattctttcttcatcaacctcttagtgtcattcacggcttagctttcactttcattgtcttcaacctccgtctatggaattttatttgaatgatga |
32079222 |
T |
|
| Q |
104 |
agaacaataaccaataaatcataaaaataacaaattaagggtaccgttattcatacttgctcaacatctcgatgaacgagttcatggcatttaaaattgg |
203 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||| | ||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |
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| T |
32079223 |
agaacaataaccaataaatcatgaaaataacaaattaagggta-cattattcatacttgctcaacatctcgttgaacaagttcatggcatttaaaattgg |
32079321 |
T |
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| Q |
204 |
tttctgcagcatgctctaaa |
223 |
Q |
| |
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||| |||||||||||||||| |
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|
| T |
32079322 |
tttttgcagcatgctctaaa |
32079341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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