View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10881_low_28 (Length: 240)
Name: NF10881_low_28
Description: NF10881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10881_low_28 |
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| [»] scaffold0188 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 10 - 234
Target Start/End: Original strand, 24820495 - 24820719
Alignment:
| Q |
10 |
atccttttgtctctgttggcataaatcatannnnnnnctctcaaatttttaaatttatattggttgaaataagggtaaagcatagcataggagcttcatt |
109 |
Q |
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| T |
24820495 |
atccttttgtctctgttggcataaatcatatttttttctctcaaatttttaaatttatattggttgaaataaggctaaagcatagcataggagcttcatt |
24820594 |
T |
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| Q |
110 |
ggttgtgattttgacaggttcaagtgtattggagtagcccaaatctcaccctcaaatataacttttttgtcttcaacatgttcattattaactatgtgga |
209 |
Q |
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| T |
24820595 |
ggttgtgattttgacaggttcaagtgtattggagtagcccaaatctcaccctcaaatataacttttttgtcttcaacatgttcattattaactatgtgga |
24820694 |
T |
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| Q |
210 |
aggaagatttgttttccctttgctt |
234 |
Q |
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| T |
24820695 |
aggaagatttgttttccctatgctt |
24820719 |
T |
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Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 53 - 153
Target Start/End: Original strand, 42234583 - 42234683
Alignment:
| Q |
53 |
aatttttaaatttatattggttgaaataagggtaaagcatagcataggagcttcattggttgtgattttgacaggttcaagtgtattggagtagcccaaa |
152 |
Q |
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| T |
42234583 |
aattttgaagtttatattggttgaaatgacgataaagcataacatgggagcttcattgcgtgtgattttgacaggttcaattgtattggagcagctcaaa |
42234682 |
T |
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| Q |
153 |
t |
153 |
Q |
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| T |
42234683 |
t |
42234683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 63 - 153
Target Start/End: Original strand, 29136487 - 29136577
Alignment:
| Q |
63 |
tttatattggttgaaataagggtaaagcatagcataggagcttcattggttgtgattttgacaggttcaagtgtattggagtagcccaaat |
153 |
Q |
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| T |
29136487 |
tttatattggttgaaacgagggtaaatcataacatatgagcttcattgagtgtgattttgacaggttccattgtattagagtagctcaaat |
29136577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0188 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0188
Description:
Target: scaffold0188; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 63 - 153
Target Start/End: Complemental strand, 31112 - 31022
Alignment:
| Q |
63 |
tttatattggttgaaataagggtaaagcatagcataggagcttcattggttgtgattttgacaggttcaagtgtattggagtagcccaaat |
153 |
Q |
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|||||||||||||||| |||||||| |||| |||| ||||||||||| |||||||||||||||||| | |||||| ||||||| ||||| |
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| T |
31112 |
tttatattggttgaaacgagggtaaatcataacatatgagcttcattgagtgtgattttgacaggttccattgtattagagtagctcaaat |
31022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 63 - 145
Target Start/End: Original strand, 28002783 - 28002865
Alignment:
| Q |
63 |
tttatattggttgaaataagggtaaagcatagcataggagcttcattggttgtgattttgacaggttcaagtgtattggagta |
145 |
Q |
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|||||||||||||||| |||||||| |||| |||| |||||||||||| |||||||||||||||||| | |||||| ||||| |
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| T |
28002783 |
tttatattggttgaaacgagggtaaatcataacatatgagcttcattgggtgtgattttgacaggttccattgtattagagta |
28002865 |
T |
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