View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10881_low_33 (Length: 223)

Name: NF10881_low_33
Description: NF10881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10881_low_33
NF10881_low_33
[»] chr1 (1 HSPs)
chr1 (1-207)||(10755604-10755810)
[»] chr8 (12 HSPs)
chr8 (1-207)||(2711230-2711436)
chr8 (1-207)||(2980192-2980398)
chr8 (41-207)||(3170254-3170420)
chr8 (1-207)||(2989300-2989506)
chr8 (1-207)||(3002285-3002491)
chr8 (41-201)||(3142150-3142310)
chr8 (52-204)||(9851095-9851247)
chr8 (25-208)||(2916099-2916282)
chr8 (25-107)||(3173803-3173885)
chr8 (36-108)||(2911152-2911224)
chr8 (141-198)||(3282582-3282639)
chr8 (141-198)||(13791255-13791312)
[»] chr6 (1 HSPs)
chr6 (1-207)||(18355700-18355906)
[»] scaffold0065 (2 HSPs)
scaffold0065 (41-207)||(45419-45585)
scaffold0065 (41-207)||(50589-50755)
[»] chr7 (1 HSPs)
chr7 (1-207)||(3919096-3919302)


Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 10755604 - 10755810
Alignment:
Q  1 ccacatactcttctcaaacaaatcttgcacttctctatcgttgtataccaattgagcaagagccgtcttccctaaaccaccaataccaacaatagcaacc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10755604 ccacatactcttctcaaacaaatcttgcacttctctatcgttgtataccaattgagcaagagccgtcttccctaaaccaccaataccaacaatagcaacc 10755703  T
Q  101 aaggagacattctgattttcatgtgattgcatcaacaaacttataattttctttttatcatattctcttccaatgatatttgattctaacacaaaagaac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10755704 aaggagacattctgattttcatgtgattgcatcaacaaacttataattttctttttatcatattctcttccaatgatatttgattctaacacaaaagaac 10755803  T
Q  201 tagtttc 207  Q
    |||||||    
T  10755804 tagtttc 10755810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 135; Significance: 2e-70; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 2711230 - 2711436
Alignment:
Q  1 ccacatactcttctcaaacaaatcttgcacttctctatcgttgtataccaattgagcaagagccgtcttccctaaaccaccaataccaacaatagcaacc 100  Q
    |||||||||||| |||||||||| ||||||||    ||| ||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||    
T  2711230 ccacatactcttttcaaacaaattttgcacttgatcatcattgtataccaattgagcaagagctgtctttcccaaaccaccaataccaacaatagcaacc 2711329  T
Q  101 aaggagacattctgattttcatgtgattgcatcaacaaacttataattttctttttatcatattctcttccaatgatatttgattctaacacaaaagaac 200  Q
    |||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||| |||||||||||| || | ||||||||||||||||||||    
T  2711330 aaggagacattctgattttcatgtgattgcctcaacaagcttataatcttctttttatcatcttctcttccaataatctctgattctaacacaaaagaac 2711429  T
Q  201 tagtttc 207  Q
    || ||||    
T  2711430 tactttc 2711436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 2980398 - 2980192
Alignment:
Q  1 ccacatactcttctcaaacaaatcttgcacttctctatcgttgtataccaattgagcaagagccgtcttccctaaaccaccaataccaacaatagcaacc 100  Q
    |||||| ||||| ||||||||||  |||||||||  ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||    
T  2980398 ccacattctcttttcaaacaaattctgcacttcttcatcgttgtataccaattgagcaagagccgtctttcccaaaccaccaataccaacaatagcaacc 2980299  T
Q  101 aaggagacattctgattttcatgtgattgcatcaacaaacttataattttctttttatcatattctcttccaatgatatttgattctaacacaaaagaac 200  Q
    |  || || |  |||||||||||||||||| ||||||| |||||||| || |||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  2980298 acagaaacttgttgattttcatgtgattgcctcaacaagcttataatcttgtttttatcatcttctcttccaatgatatttgattctaacacataagaac 2980199  T
Q  201 tagtttc 207  Q
     ||||||    
T  2980198 aagtttc 2980192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 41 - 207
Target Start/End: Original strand, 3170254 - 3170420
Alignment:
Q  41 ttgtataccaattgagcaagagccgtcttccctaaaccaccaataccaacaatagcaaccaaggagacattctgattttcatgtgattgcatcaacaaac 140  Q
    ||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |    
T  3170254 ttgtataccaattgagcaagagctgtctttcccaaaccaccaataccaacaatagcaaccaaggagacattctgattttcatgtgattgcctcaacaagc 3170353  T
Q  141 ttataattttctttttatcatattctcttccaatgatatttgattctaacacaaaagaactagtttc 207  Q
    |||| || ||||||||||||| ||||||||||||||| | ||||||||||||||||||||| |||||    
T  3170354 ttatgatcttctttttatcatcttctcttccaatgatctctgattctaacacaaaagaacttgtttc 3170420  T

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Target: chr8; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 2989506 - 2989300
Alignment:
Q  1 ccacatactcttctcaaacaaatcttgcacttctctatcgttgtataccaattgagcaagagccgtcttccctaaaccaccaataccaacaatagcaacc 100  Q
    |||||||  ||| |||||||||| || |||||| | ||| |||||||||| |||||||||||| ||||| || |||||||||||||||||||||||||||    
T  2989506 ccacatatgcttttcaaacaaatttttcacttcaccatctttgtataccagttgagcaagagctgtctttcccaaaccaccaataccaacaatagcaacc 2989407  T
Q  101 aaggagacattctgattttcatgtgattgcatcaacaaacttataattttctttttatcatattctcttccaatgatatttgattctaacacaaaagaac 200  Q
    || ||||||||||||| ||||||||||||| ||||||| ||||||||  | |||| ||| | ||||||||||||||| |  |||||||||||| |||| |    
T  2989406 aatgagacattctgatgttcatgtgattgcctcaacaagcttataatcgtgttttgatcttcttctcttccaatgatctcagattctaacacataagagc 2989307  T
Q  201 tagtttc 207  Q
     ||||||    
T  2989306 aagtttc 2989300  T

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Target: chr8; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 3002491 - 3002285
Alignment:
Q  1 ccacatactcttctcaaacaaatcttgcacttctctatcgttgtataccaattgagcaagagccgtcttccctaaaccaccaataccaacaatagcaacc 100  Q
    |||||||||  | |||||||||| ||||||||||| ||| || |||||||| ||||||||||  ||||| |||||||||||||| ||||||||||||| |    
T  3002491 ccacatacttatttcaaacaaattttgcacttctccatcattatataccaactgagcaagagttgtctttcctaaaccaccaatcccaacaatagcaatc 3002392  T
Q  101 aaggagacattctgattttcatgtgattgcatcaacaaacttataattttctttttatcatattctcttccaatgatatttgattctaacacaaaagaac 200  Q
    ||||||||||| || ||| |||||| |||  |||| |    |||||| | ||||||||| | |||||||||||||||||  ||||||||||| |||||||    
T  3002391 aaggagacattttggtttccatgtggttgtctcaaaaggtgtataatctcctttttatcgtcttctcttccaatgatatccgattctaacaccaaagaac 3002292  T
Q  201 tagtttc 207  Q
    |||||||    
T  3002291 tagtttc 3002285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 41 - 201
Target Start/End: Original strand, 3142150 - 3142310
Alignment:
Q  41 ttgtataccaattgagcaagagccgtcttccctaaaccaccaataccaacaatagcaaccaaggagacattctgattttcatgtgattgcatcaacaaac 140  Q
    |||||||||||||||| |||||| ||||| || ||||||||||| ||||||||||||||||  ||||||   |||||||||||||||||| ||||||  |    
T  3142150 ttgtataccaattgagaaagagctgtctttcccaaaccaccaatcccaacaatagcaaccacagagacacgttgattttcatgtgattgcctcaacatgc 3142249  T
Q  141 ttataattttctttttatcatattctcttccaatgatatttgattctaacacaaaagaact 201  Q
    ||| ||| |  ||||||||||  |||||||||||||||| ||| |||||||||||||||||    
T  3142250 ttacaatgtcatttttatcatcatctcttccaatgatatctgactctaacacaaaagaact 3142310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 52 - 204
Target Start/End: Original strand, 9851095 - 9851247
Alignment:
Q  52 ttgagcaagagccgtcttccctaaaccaccaataccaacaatagcaaccaaggagacattctgattttcatgtgattgcatcaacaaacttataattttc 151  Q
    |||||||||||  ||||| || ||||||||||  ||||||| ||||| ||| |||||||| ||||||||||||| |||  ||||||| |||||||| |||    
T  9851095 ttgagcaagagttgtctttcccaaaccaccaaatccaacaacagcaatcaaagagacattttgattttcatgtggttgtctcaacaagcttataatcttc 9851194  T
Q  152 tttttatcatattctcttccaatgatatttgattctaacacaaaagaactagt 204  Q
     ||||||||| |||||||||||||||||  ||||| |||||||||||||||||    
T  9851195 attttatcatcttctcttccaatgatatccgattccaacacaaaagaactagt 9851247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 25 - 208
Target Start/End: Original strand, 2916099 - 2916282
Alignment:
Q  25 ttgcacttctctatcgttgtataccaattgagcaagagccgtcttccctaaaccaccaataccaacaatagcaaccaaggagacattctgattttcatgt 124  Q
    ||||||||| | ||| || ||||||| |||||||||||| ||||| |||||||| |||||||||||||| |||| |||||||||||| || |||  ||||    
T  2916099 ttgcacttccccatcattatataccagttgagcaagagctgtcttacctaaaccgccaataccaacaatggcaatcaaggagacattgtggtttctatgt 2916198  T
Q  125 gattgcatcaacaaacttataattttctttttatcatattctcttccaatgatatttgattctaacacaaaagaactagtttct 208  Q
    | |||| |||| ||| ||| ||| |  ||||||| || |||||| |||||||||| ||||||||| |||||||| | |||||||    
T  2916199 ggttgcctcaataaatttacaatctcttttttattatcttctctaccaatgatatctgattctaatacaaaagagcaagtttct 2916282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 25 - 107
Target Start/End: Original strand, 3173803 - 3173885
Alignment:
Q  25 ttgcacttctctatcgttgtataccaattgagcaagagccgtcttccctaaaccaccaataccaacaatagcaaccaaggaga 107  Q
    ||||||||||| ||| ||||||||||||||||||||||| |||||||| ||||||||||| ||||| || ||||||| |||||    
T  3173803 ttgcacttctccatcattgtataccaattgagcaagagctgtcttccccaaaccaccaattccaactattgcaaccagggaga 3173885  T

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Target: chr8; HSP #10
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 36 - 108
Target Start/End: Original strand, 2911152 - 2911224
Alignment:
Q  36 tatcgttgtataccaattgagcaagagccgtcttccctaaaccaccaataccaacaatagcaaccaaggagac 108  Q
    |||| ||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||| | |||||||||    
T  2911152 tatcattgtataccaactgagcaagagctgtcttgcctaaaccaccaataccaacaatagctatcaaggagac 2911224  T

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Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 141 - 198
Target Start/End: Original strand, 3282582 - 3282639
Alignment:
Q  141 ttataattttctttttatcatattctcttccaatgatatttgattctaacacaaaaga 198  Q
    ||||||| | ||||||||||| |||||||||| |||||||||||||||||| ||||||    
T  3282582 ttataatctcctttttatcatcttctcttccattgatatttgattctaacaaaaaaga 3282639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 198
Target Start/End: Complemental strand, 13791312 - 13791255
Alignment:
Q  141 ttataattttctttttatcatattctcttccaatgatatttgattctaacacaaaaga 198  Q
    ||||||| | ||||||||||| ||||||||| ||||| ||||||||||||| ||||||    
T  13791312 ttataatctcctttttatcatcttctcttcccatgatgtttgattctaacaaaaaaga 13791255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 18355906 - 18355700
Alignment:
Q  1 ccacatactcttctcaaacaaatcttgcacttctctatcgttgtataccaattgagcaagagccgtcttccctaaaccaccaataccaacaatagcaacc 100  Q
    |||||||  ||| |||||||||| || |||||| | ||| |||||||||| |||||||||||| ||||| || |||||||||||||||||||||||||||    
T  18355906 ccacatatgcttttcaaacaaatttttcacttcaccatctttgtataccagttgagcaagagctgtctttcccaaaccaccaataccaacaatagcaacc 18355807  T
Q  101 aaggagacattctgattttcatgtgattgcatcaacaaacttataattttctttttatcatattctcttccaatgatatttgattctaacacaaaagaac 200  Q
    || ||||||||||||| ||||||||||||| ||||||| |||||||| || |||||||| | ||||||||||||||| |  |||||||||||| |||| |    
T  18355806 aatgagacattctgatgttcatgtgattgcctcaacaagcttataatcttgtttttatcttcttctcttccaatgatctcagattctaacacataagagc 18355707  T
Q  201 tagtttc 207  Q
     ||||||    
T  18355706 aagtttc 18355700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 99; Significance: 5e-49; HSPs: 2)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 41 - 207
Target Start/End: Complemental strand, 45585 - 45419
Alignment:
Q  41 ttgtataccaattgagcaagagccgtcttccctaaaccaccaataccaacaatagcaaccaaggagacattctgattttcatgtgattgcatcaacaaac 140  Q
    ||||||||||||||||||||||| ||||| || ||||| ||||| || |||||||||||||||||||||||||||||||||||||||||| ||||||| |    
T  45585 ttgtataccaattgagcaagagctgtctttcccaaaccgccaatccctacaatagcaaccaaggagacattctgattttcatgtgattgcctcaacaagc 45486  T
Q  141 ttataattttctttttatcatattctcttccaatgatatttgattctaacacaaaagaactagtttc 207  Q
    |||| || || ||| |||||| ||||||||| ||||||| ||||||| ||||||||||||| |||||    
T  45485 ttatgatcttatttctatcatcttctcttccgatgatatctgattctgacacaaaagaacttgtttc 45419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 41 - 207
Target Start/End: Complemental strand, 50755 - 50589
Alignment:
Q  41 ttgtataccaattgagcaagagccgtcttccctaaaccaccaataccaacaatagcaaccaaggagacattctgattttcatgtgattgcatcaacaaac 140  Q
    ||||| || |||||||||||||  ||||| || ||||||||||| ||||||||||||||||  || |||| ||| |||||||||| || | ||||||| |    
T  50755 ttgtaaactaattgagcaagagttgtctttcccaaaccaccaatcccaacaatagcaaccacagaaacatgctggttttcatgtggttacctcaacaagc 50656  T
Q  141 ttataattttctttttatcatattctcttccaatgatatttgattctaacacaaaagaactagtttc 207  Q
    ||| ||| |  |||| ||| | ||||||||| |||||||  ||||| ||||||||||||||| ||||    
T  50655 ttaaaatctcattttaatcgtcttctcttccgatgatatcagattcgaacacaaaagaactattttc 50589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 3919096 - 3919302
Alignment:
Q  1 ccacatactcttctcaaacaaatcttgcacttctctatcgttgtataccaattgagcaagagccgtcttccctaaaccaccaataccaacaatagcaacc 100  Q
    |||||||||| | |||||| | | |||||||||   ||| ||||||| ||||||||||||||  ||||| |||||||||||||| ||||||||| |||||    
T  3919096 ccacatactcctttcaaacgagttttgcacttccacatcattgtatatcaattgagcaagagttgtctttcctaaaccaccaatcccaacaataccaacc 3919195  T
Q  101 aaggagacattctgattttcatgtgattgcatcaacaaacttataattttctttttatcatattctcttccaatgatatttgattctaacacaaaagaac 200  Q
    |   ||||||| |||||| |||||| |||||||||||| |||||||| ||||||||||||| |||||||||||||||||  ||||||||| |||| ||||    
T  3919196 acaaagacattttgatttccatgtggttgcatcaacaagcttataatcttctttttatcatcttctcttccaatgatatccgattctaacgcaaatgaac 3919295  T
Q  201 tagtttc 207  Q
    | |||||    
T  3919296 ttgtttc 3919302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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