View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10881_low_34 (Length: 219)
Name: NF10881_low_34
Description: NF10881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10881_low_34 |
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Alignment Details
Target: chr6 (Bit Score: 158; Significance: 3e-84; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 4 - 201
Target Start/End: Original strand, 8397978 - 8398175
Alignment:
| Q |
4 |
tatattagaaagaaaagtaaaaagaaattgagtgtattgctcaacaattaccaataaccaagacttgctcatcaccaccgtcaaagccttccatttcaat |
103 |
Q |
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| T |
8397978 |
tatattagagagaaaagtaaaaagaaattgagtgtgttgctcaacaattaccaataaccaagacttggtcgtcaccaccgtcaaagccttccatttcaat |
8398077 |
T |
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| Q |
104 |
aagaaactgtgtcttgatacatctagatgcttcatgctcgttaccatttgacattcgctgcaacaagttacatgtgttgactaaataagagaaaattt |
201 |
Q |
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| T |
8398078 |
aagaaactgtgtcttgatacgtctagatgcttcatgctcattaccatttgacattctctgcaacaagttacatgtattaaataaataagagaaaattt |
8398175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 23 - 151
Target Start/End: Original strand, 8392794 - 8392922
Alignment:
| Q |
23 |
aaaagaaattgagtgtattgctcaacaattaccaataaccaagacttgctcatcaccaccgtcaaagccttccatttcaataagaaactgtgtcttgata |
122 |
Q |
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| T |
8392794 |
aaaagaaattgagcgtattgcacaacaattaccaataaccaggacttgctcgttaccaccggaaaagctttccatttcaataaaaaattgtgtcttcata |
8392893 |
T |
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| Q |
123 |
catctagatgcttcatgctcgttaccatt |
151 |
Q |
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| T |
8392894 |
cgtctagttatttcatgctcattatcatt |
8392922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 6 - 118
Target Start/End: Complemental strand, 8424503 - 8424390
Alignment:
| Q |
6 |
tattagaaagaaaagtaaaaagaaattgagtgtattg-ctcaacaattaccaataaccaagacttgctcatcaccaccgtcaaagccttccatttcaata |
104 |
Q |
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| T |
8424503 |
tattaaaaagaaaagtaaaaagaaattgagcctagtggctcaacaattacctataagcagaactttctcgttaccactgtcaaagccttccatttcaata |
8424404 |
T |
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| Q |
105 |
agaaactgtgtctt |
118 |
Q |
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| T |
8424403 |
agaaactgtgtctt |
8424390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 49 - 123
Target Start/End: Complemental strand, 8409168 - 8409094
Alignment:
| Q |
49 |
aattaccaataaccaagacttgctcatcaccaccgtcaaagccttccatttcaataagaaactgtgtcttgatac |
123 |
Q |
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| T |
8409168 |
aattaccaataaccaggacttgctcgttaccaccggcaaagccttccatttcaataagaaattgtgtctttatac |
8409094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 77 - 118
Target Start/End: Original strand, 8390129 - 8390170
Alignment:
| Q |
77 |
accaccgtcaaagccttccatttcaataagaaactgtgtctt |
118 |
Q |
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| T |
8390129 |
accactgtcaaagccttccatttcaataagaaactgtgtctt |
8390170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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