View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10881_low_35 (Length: 210)
Name: NF10881_low_35
Description: NF10881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10881_low_35 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 123; Significance: 2e-63; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 18 - 140
Target Start/End: Original strand, 52740837 - 52740959
Alignment:
| Q |
18 |
aaatagtttgtcaccaggagaaaacacaatgatggctgcatgaacatcacataagacacaaagttcgcttgcttttctgaataaaccttgtcttcttttt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52740837 |
aaatagtttgtcaccaggagaaaacacaatgatggctgcatgaacatcacataagacacaaagttcgcttgcttttctgaataaaccttgtcttcttttt |
52740936 |
T |
|
| Q |
118 |
gagaaagtcacttgtttctgtga |
140 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
52740937 |
gagaaagtcacttgtttctgtga |
52740959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 64 - 132
Target Start/End: Original strand, 13539486 - 13539554
Alignment:
| Q |
64 |
tcacataagacacaaagttcgcttgcttttctgaataaaccttgtcttctttttgagaaagtcacttgt |
132 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |||||| ||||||||||| |||||||| || |||||| |
|
|
| T |
13539486 |
tcacataagacacaaagttcacttgcttttttgaatagaccttgtcttcgctttgagaatgtgacttgt |
13539554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 22 - 125
Target Start/End: Original strand, 45394230 - 45394333
Alignment:
| Q |
22 |
agtttgtcaccaggagaaaacacaatgatggctgcatgaacatcacataagacacaaagttcgcttgcttttctgaataaaccttgtcttctttttgaga |
121 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45394230 |
agtttgtcaccaggggaaaacacaatgatggctgcatgaacatcacataagacacaaagttcgcttgcttttctgaataaaccttgtcttctttttgaga |
45394329 |
T |
|
| Q |
122 |
aagt |
125 |
Q |
| |
|
|||| |
|
|
| T |
45394330 |
aagt |
45394333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 21 - 131
Target Start/End: Complemental strand, 35782121 - 35782011
Alignment:
| Q |
21 |
tagtttgtcaccaggagaaaacacaatgatggctgcatgaacatcacataagacacaaagttcgcttgcttttctgaataaaccttgtcttctttttgag |
120 |
Q |
| |
|
||||||| || ||||||||||||| |||||||||||||||||||||||||| |||||||| || ||||||| ||||||||||||||||||||||||| |
|
|
| T |
35782121 |
tagtttgccagcaggagaaaacacgatgatggctgcatgaacatcacataaagtgcaaagttcactcgcttttcggaataaaccttgtcttctttttgag |
35782022 |
T |
|
| Q |
121 |
aaagtcacttg |
131 |
Q |
| |
|
||||| ||||| |
|
|
| T |
35782021 |
aaagtgacttg |
35782011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 64 - 132
Target Start/End: Original strand, 9668462 - 9668530
Alignment:
| Q |
64 |
tcacataagacacaaagttcgcttgcttttctgaataaaccttgtcttctttttgagaaagtcacttgt |
132 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |||||| ||||||||||| |||||||| || |||||| |
|
|
| T |
9668462 |
tcacataagacacaaagttcacttgcttttttgaatagaccttgtcttcgctttgagaatgtgacttgt |
9668530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University