View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10881_low_6 (Length: 374)
Name: NF10881_low_6
Description: NF10881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10881_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 18 - 358
Target Start/End: Original strand, 49772806 - 49773142
Alignment:
| Q |
18 |
caaatcaacaagttaataggttgagaccatgggttaccctacaaactctagctagctttatgcttaaattttaagtgtatgaatgaaatataaactgaaa |
117 |
Q |
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| T |
49772806 |
caaatcaacaagttaataggttgagaccatgggttaccctacaaactctagctagctttatgcttaaatttgaagtgtatgaatgaaatataaactgaaa |
49772905 |
T |
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| Q |
118 |
agaaaacgatatattcatattgaattgttggcagttacccaaagccaatcattaaatttttatactacaagactttaaacctgtgccatgccatactttg |
217 |
Q |
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| T |
49772906 |
agaaaacgatatattcatattgaattgttggcagttacccaaagccaatcattaaatttttatactacaagactttaaacctgtgccatgccatactttg |
49773005 |
T |
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| Q |
218 |
atcacatgcatatatatcatcatattctcaatcctcgtcccgattccatgaccctctgattgttggaattataaaatgatttctttttctacatcaacca |
317 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
49773006 |
atcacatgc----atatcatcatattctcaatcctcgtcccgattccatgaccctctgattgttggaataataaaatgatttctttttctacatcaacca |
49773101 |
T |
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| Q |
318 |
taaatataatcctcgtcctcaacccatacattccatctctg |
358 |
Q |
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| T |
49773102 |
taaatataatcctcgtcctcaccccattcattccatctctg |
49773142 |
T |
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