View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10881_low_9 (Length: 336)
Name: NF10881_low_9
Description: NF10881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10881_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 14 - 320
Target Start/End: Complemental strand, 35950167 - 35949862
Alignment:
| Q |
14 |
aggttgacgagcatcagactagatcttgagagggtggaattgatcagattgctggcacaataactaccgaatccacaagcaccaattctttaccgacata |
113 |
Q |
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| T |
35950167 |
aggttgacgagcatcagactagatcttgagatggtggaattgattagattgctggcacaataactaccgaatccacaagcaccaattctttaccgacata |
35950068 |
T |
|
| Q |
114 |
aacaacaaattaacaaccatttcagacccaagagtctgaattcaatcgctacagactgaaccaaatttgagaaggatgaaggccacgagcctgaagcatg |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
35950067 |
aacaacaaattaacaaccatttcagacccaagagtctgaattcaatcactaaagactgaaccgaatttgagaaggatgaaggccacgagcctgaagcatg |
35949968 |
T |
|
| Q |
214 |
aggcatcaacaccttcccaataccacccccaacccaccgacattgggggcgacgaaccaaagccaagaaaactgcagatctcaatagatattgaagaatc |
313 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
35949967 |
aggcatcaacaccttcccaataccaccccc-acccaccgacattgggggcgacaaaccaaagccaagaaaactgcagatctcaatagatatgaaagaatc |
35949869 |
T |
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| Q |
314 |
agagatc |
320 |
Q |
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||||||| |
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| T |
35949868 |
agagatc |
35949862 |
T |
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