View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10882_low_1 (Length: 276)
Name: NF10882_low_1
Description: NF10882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10882_low_1 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 23 - 276
Target Start/End: Complemental strand, 20113445 - 20113192
Alignment:
| Q |
23 |
gaggagggagttgaatgatttgagagtaggagtgcagcgaaaggaagggatagagaggaaggtttgaacggcacgtgaaggaagacgggcacgtgcatag |
122 |
Q |
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| T |
20113445 |
gaggagggagttgaatgatttgagagtaggggtgcagcgaaaggaagggatagagaggaaggtttgaacggcacgtgaaggaagacgggcacgtgcatag |
20113346 |
T |
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| Q |
123 |
aaggagatgacgtggcagaggaggggttcagggacgcggtggcgagtgtcgttgtggagttgttgaaggataagttccatttgagggatcattttggcgc |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20113345 |
aaggagatgacgtggcagaggaggggttcagggacgcggtggcgagtgtcgttgtggagttgttgaaggataagttccatttgagggatcattttggcgc |
20113246 |
T |
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| Q |
223 |
ggccgagtttggtgatgatgaggtcgtaggagagaatggaataacgataatgat |
276 |
Q |
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| T |
20113245 |
ggccgagtttggtgatgatgaggtcgtaggagagaatggaataacgataatgat |
20113192 |
T |
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