View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10882_low_3 (Length: 260)
Name: NF10882_low_3
Description: NF10882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10882_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 19 - 253
Target Start/End: Complemental strand, 47181012 - 47180778
Alignment:
| Q |
19 |
tcaggtgcccaaactaacaggattaaggttgatgaagcttctgcggcgacgacagcgagtaacggtgaggagaagaatgtggtagagattgagaatgatc |
118 |
Q |
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| T |
47181012 |
tcaggtgcccaaactaacaggattaaggttgatgaagcttctgcggcgacgacagcgagtaacggtgaggagaagaatgtggtagagattgagaatgatc |
47180913 |
T |
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| Q |
119 |
agaagaagaagagtgatgatagtgttcaacgctctcgaagatcaaagccgaatccaaggctaagtaatccacctaagcatttacgtggtgaacaggttgc |
218 |
Q |
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| T |
47180912 |
agaagaagaagagtgatgatagtgttcaacgctctcgaagatcaaagccgaatccaaggctaagtaatccacctaagcatttacgtggtgaacaggttgc |
47180813 |
T |
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| Q |
219 |
tgctggatggccatcttggctcactgctgtctgtg |
253 |
Q |
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| T |
47180812 |
tgctggatggccatcttggctcactgctgtctgtg |
47180778 |
T |
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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 239
Target Start/End: Complemental strand, 49216162 - 49216107
Alignment:
| Q |
184 |
aatccacctaagcatttacgtggtgaacaggttgctgctggatggccatcttggct |
239 |
Q |
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| T |
49216162 |
aatccacctaaccatatacatggtgaacaagtggctgctgggtggccatcttggct |
49216107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 239
Target Start/End: Original strand, 6700130 - 6700202
Alignment:
| Q |
167 |
cgaatccaaggctaagtaatccacctaagcatttacgtggtgaacaggttgctgctggatggccatcttggct |
239 |
Q |
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| T |
6700130 |
cgaatccgaggttgagtaatccacctaataatgttcatggtgaacaggttgcagctggttggccttcttggct |
6700202 |
T |
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