View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10882_low_5 (Length: 239)
Name: NF10882_low_5
Description: NF10882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10882_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 42488279 - 42488491
Alignment:
| Q |
1 |
gttttgtgtcctcaaatattgtaatttgacaattttagtctccacctttaaaataaccaattagagtcaccatagtatgagaaagtcttgcttattttta |
100 |
Q |
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| T |
42488279 |
gttttgtgtcctcaaatattgtaatttgacaattttagtctccacctttaaaataaccaattagagtcaccatagtatgagaaagtcttgcttattttta |
42488378 |
T |
|
| Q |
101 |
aaagataaattagtttaaacatatcttcatctttctcattgtattataccattaatctaataataatgtgcatgtcttgtataatagtaaatttctgaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
42488379 |
aaagataaattagtttaaacatatcttcatctttctcattgtattataccattaatctaataataatgtgca----------aatagtaaatttctgaaa |
42488468 |
T |
|
| Q |
201 |
ttacaatgggtcattgtgatttc |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
42488469 |
ttacaatgggtcattgtgatttc |
42488491 |
T |
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