View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10882_low_7 (Length: 220)
Name: NF10882_low_7
Description: NF10882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10882_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 134; Significance: 6e-70; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 57 - 206
Target Start/End: Complemental strand, 19949244 - 19949095
Alignment:
| Q |
57 |
tgtcatgtagcttagctagtataagaaataagtaacataagcaatcatgcaataaggtttcagttcgatgagcttataatgctttcaactaaggcctaac |
156 |
Q |
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| T |
19949244 |
tgtcatgtagcttagctagtataagaaataagtaacataagcaaacatgcaataaggtttcagttcgatgagcttataatgctttcaacaaaggtctagc |
19949145 |
T |
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| Q |
157 |
cttgccaccttcaactctgtaaccactttctcgagtcggctaattctctg |
206 |
Q |
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| T |
19949144 |
cttgccaccttcaactctgtaaccactttctcgagtcggctaattctctg |
19949095 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 30 - 206
Target Start/End: Original strand, 24838708 - 24838886
Alignment:
| Q |
30 |
ttcatttggtcttgtttttt-aacattct-gtcatgtagcttagctagtataagaaataagtaacataagcaatcatgcaataaggtttcagttcgatga |
127 |
Q |
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| T |
24838708 |
ttcatttggtcttgttttttcaacattcttgtcatgaagcttagctagtacaagaaataagtaacataagtgaacatgcaataaggtttcagttcattga |
24838807 |
T |
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| Q |
128 |
gcttataatgctttcaactaaggcctaaccttgccaccttcaactctgtaaccactttctcgagtcggctaattctctg |
206 |
Q |
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| T |
24838808 |
gctaataatgttttcaactatggcctaaccttgccatcttcaactttgtaaccactttctcgagtcggctaattctctg |
24838886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 106 - 206
Target Start/End: Complemental strand, 19859401 - 19859301
Alignment:
| Q |
106 |
caataaggtttcagttcgatgagcttataatgctttcaactaaggcctaaccttgccaccttcaactctgtaaccactttctcgagtcggctaattctct |
205 |
Q |
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| T |
19859401 |
caataagctttcagttttatgagttaataatgtttttaacaaaggcctaaccttgtcatcttcaatttcttatgcactttctcgagtcggctaattctct |
19859302 |
T |
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| Q |
206 |
g |
206 |
Q |
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| T |
19859301 |
g |
19859301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 83
Target Start/End: Original strand, 22687957 - 22688016
Alignment:
| Q |
25 |
catgtttcatttggtcttgttttttaacattc-tgtcatgtagcttagctagtataagaa |
83 |
Q |
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| T |
22687957 |
catgtttcatttggttttctttttaaacattcttgtcatgtaacttatctagtataagaa |
22688016 |
T |
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