View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10883_high_1 (Length: 425)

Name: NF10883_high_1
Description: NF10883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10883_high_1
NF10883_high_1
[»] chr1 (6 HSPs)
chr1 (145-236)||(32876764-32876855)
chr1 (156-235)||(11800831-11800908)
chr1 (100-182)||(7352098-7352180)
chr1 (247-324)||(7644038-7644114)
chr1 (99-183)||(7644183-7644266)
chr1 (97-137)||(32876814-32876854)
[»] chr6 (4 HSPs)
chr6 (14-216)||(24634109-24634311)
chr6 (97-187)||(24634094-24634184)
chr6 (239-299)||(16990751-16990811)
chr6 (13-79)||(24634206-24634272)
[»] chr5 (3 HSPs)
chr5 (160-325)||(22875947-22876112)
chr5 (160-221)||(31678835-31678896)
chr5 (100-153)||(28297997-28298050)
[»] chr2 (3 HSPs)
chr2 (109-187)||(32225895-32225973)
chr2 (156-197)||(25057109-25057150)
chr2 (152-183)||(14199862-14199893)
[»] chr4 (3 HSPs)
chr4 (105-216)||(28313154-28313265)
chr4 (248-325)||(25242806-25242883)
chr4 (248-304)||(24826153-24826209)
[»] chr7 (2 HSPs)
chr7 (99-197)||(18855060-18855158)
chr7 (248-299)||(12599801-12599852)
[»] chr8 (4 HSPs)
chr8 (99-187)||(24526437-24526525)
chr8 (206-266)||(26567924-26567984)
chr8 (99-183)||(26568170-26568254)
chr8 (99-183)||(26568022-26568106)
[»] chr3 (2 HSPs)
chr3 (239-299)||(14513596-14513656)
chr3 (13-221)||(14977914-14978120)


Alignment Details
Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 145 - 236
Target Start/End: Complemental strand, 32876855 - 32876764
Alignment:
Q  145 ctgagctgacatgacttgaacaatcaaactagtgttgagtgagatcttgctagtcggtccagtaaaatattacaagttacttggtatggtcg 236  Q
    |||||||| | |||||||||||||||||| ||||||||||||||||||||||||||||| |||||  |||||||||| || |||||||||||    
T  32876855 ctgagctggcctgacttgaacaatcaaaccagtgttgagtgagatcttgctagtcggtcaagtaaggtattacaagtcacatggtatggtcg 32876764  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 156 - 235
Target Start/End: Complemental strand, 11800908 - 11800831
Alignment:
Q  156 tgacttgaacaatcaaactagtgttgagtgagatcttgctagtcggtccagtaaaatattacaagttacttggtatggtc 235  Q
    ||||||||||| |||||| | |||||||||||||||||||||| |||  |||||| |||||||||| || ||| ||||||    
T  11800908 tgacttgaacagtcaaaccaatgttgagtgagatcttgctagttggt--agtaaagtattacaagtcacatggaatggtc 11800831  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 100 - 182
Target Start/End: Original strand, 7352098 - 7352180
Alignment:
Q  100 gctggcatgacttcaacaatcaaaccagtgatgagtgaagacagactgagctgacatgacttgaacaatcaaactagtgttga 182  Q
    |||||| |||||| |||  ||||||||||| ||| |||||||  ||||||||| | |||||||||||||||||| | ||||||    
T  7352098 gctggcctgacttgaactgtcaaaccagtgttgattgaagacgaactgagctggcctgacttgaacaatcaaaccaatgttga 7352180  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 324
Target Start/End: Complemental strand, 7644114 - 7644038
Alignment:
Q  247 atccacagttcaccaagcgtcgagcctgttaaagcatatacatttgttctttattcggtcaaccgatactagtccaca 324  Q
    ||||| ||| ||||||||||| ||| |||||| || || || |||||||||||||||||| ||| |||| ||||||||    
T  7644114 atccatagtccaccaagcgtcaagcatgttaaggcgtagacgtttgttctttattcggtcgacctatac-agtccaca 7644038  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 99 - 183
Target Start/End: Complemental strand, 7644266 - 7644183
Alignment:
Q  99 agctggcatgacttcaacaatcaaaccagtgatgagtgaagacagactgagctgacatgacttgaacaatcaaactagtgttgag 183  Q
    |||| ||||||||| |||| |||| | |||| |||||| ||||   ||||||||||||||||| |||| ||||||||||| ||||    
T  7644266 agctcgcatgacttgaacagtcaa-ctagtgctgagtggagacgagctgagctgacatgacttaaacagtcaaactagtgctgag 7644183  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 97 - 137
Target Start/End: Complemental strand, 32876854 - 32876814
Alignment:
Q  97 tgagctggcatgacttcaacaatcaaaccagtgatgagtga 137  Q
    ||||||||| |||||| |||||||||||||||| |||||||    
T  32876854 tgagctggcctgacttgaacaatcaaaccagtgttgagtga 32876814  T

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Target: chr6 (Bit Score: 59; Significance: 7e-25; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 14 - 216
Target Start/End: Original strand, 24634109 - 24634311
Alignment:
Q  14 tgaacagtcgaacccatgttgagtgaagacgagctaagctggtatgatttgaacattcaaaccagttatgggtgaagacggtttgagctggcatgacttc 113  Q
    ||||||||| ||||  |||||||||| ||| | || |||||| |||| ||||| | |||||||| |  || |||| ||||||||||| |||| ||||||     
T  24634109 tgaacagtcaaaccagtgttgagtgaggaccaactgagctggcatgaattgaataatcaaaccaatgttgagtgaggacggtttgagttggcgtgacttg 24634208  T
Q  114 aacaatcaaaccagtgatgagtgaagacagactgagctgacatgacttgaacaatcaaactagtgttgagtgagatcttgctagtcggtccagtaaaata 213  Q
    |||| |||||| |||| ||||||| |||   ||||| || ||||||||||||| |||||| |||||| |||||| | |  |||||||||| |||||||||    
T  24634209 aacagtcaaacgagtgttgagtgaggacgagctgagatggcatgacttgaacattcaaaccagtgttaagtgaggtttctctagtcggtcaagtaaaata 24634308  T
Q  214 tta 216  Q
    |||    
T  24634309 tta 24634311  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 97 - 187
Target Start/End: Original strand, 24634094 - 24634184
Alignment:
Q  97 tgagctggcatgacttcaacaatcaaaccagtgatgagtgaagacagactgagctgacatgacttgaacaatcaaactagtgttgagtgag 187  Q
    |||||||||||||| | |||| ||||||||||| ||||||| |||  ||||||||| ||||| ||||| |||||||| | |||||||||||    
T  24634094 tgagctggcatgacctgaacagtcaaaccagtgttgagtgaggaccaactgagctggcatgaattgaataatcaaaccaatgttgagtgag 24634184  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 239 - 299
Target Start/End: Original strand, 16990751 - 16990811
Alignment:
Q  239 ccatgttaatccacagttcaccaagcgtcgagcctgttaaagcatatacatttgttcttta 299  Q
    |||||||| |||||| | ||||||||||| ||||||||||||| || ||||||||||||||    
T  16990751 ccatgttagtccacaatccaccaagcgtcaagcctgttaaagcgtagacatttgttcttta 16990811  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 79
Target Start/End: Original strand, 24634206 - 24634272
Alignment:
Q  13 ttgaacagtcgaacccatgttgagtgaagacgagctaagctggtatgatttgaacattcaaaccagt 79  Q
    |||||||||| |||   |||||||||| |||||||| || ||| |||| ||||||||||||||||||    
T  24634206 ttgaacagtcaaacgagtgttgagtgaggacgagctgagatggcatgacttgaacattcaaaccagt 24634272  T

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Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 160 - 325
Target Start/End: Complemental strand, 22876112 - 22875947
Alignment:
Q  160 ttgaacaatcaaactagtgttgagtgagatcttgctagtcggtccagtaaaatattacaagttacttggtatggtcggtccatgttaatccacagttcac 259  Q
    ||||||| |||| | |||||| |||||||||||| | ||||||| ||| || |||||||||| || |||||||||| |||||||  | || || || |||    
T  22876112 ttgaacagtcaacccagtgttaagtgagatcttgttggtcggtcaagtcaactattacaagtcacatggtatggtccgtccatgccagtctacggtccac 22876013  T
Q  260 caagcgtcgagcctgttaaagcatatacatttgttctttattcggtcaaccgatactagtccacaa 325  Q
    |||||||| || | ||||| || || || ||||||||||||  |||||||| |||| |||||||||    
T  22876012 caagcgtcaagtcagttaaggcgtaaacgtttgttctttatctggtcaaccaataccagtccacaa 22875947  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 160 - 221
Target Start/End: Complemental strand, 31678896 - 31678835
Alignment:
Q  160 ttgaacaatcaaactagtgttgagtgagatcttgctagtcggtccagtaaaatattacaagt 221  Q
    ||||||| ||||||| |||||||||||||||||| ||||  |||||| ||||||||||||||    
T  31678896 ttgaacagtcaaactcgtgttgagtgagatcttgatagttagtccagcaaaatattacaagt 31678835  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 153
Target Start/End: Original strand, 28297997 - 28298050
Alignment:
Q  100 gctggcatgacttcaacaatcaaaccagtgatgagtgaagacagactgagctga 153  Q
    |||||| |||||| |||||||||||||||| ||| ||||||||  |||||||||    
T  28297997 gctggcttgacttgaacaatcaaaccagtgttgactgaagacatgctgagctga 28298050  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 109 - 187
Target Start/End: Complemental strand, 32225973 - 32225895
Alignment:
Q  109 acttcaacaatcaaaccagtgatgagtgaagacagactgagctgacatgacttgaacaatcaaactagtgttgagtgag 187  Q
    |||| |||| ||||| ||||| ||||||| |||  ||||| ||||||||||||||||| ||||||||||||||||||||    
T  32225973 acttgaacagtcaaatcagtgttgagtgaggacgaactgaactgacatgacttgaacagtcaaactagtgttgagtgag 32225895  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 156 - 197
Target Start/End: Original strand, 25057109 - 25057150
Alignment:
Q  156 tgacttgaacaatcaaactagtgttgagtgagatcttgctag 197  Q
    ||||||||||| |||| |||||||||||||||||||||||||    
T  25057109 tgacttgaacagtcaagctagtgttgagtgagatcttgctag 25057150  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 152 - 183
Target Start/End: Original strand, 14199862 - 14199893
Alignment:
Q  152 gacatgacttgaacaatcaaactagtgttgag 183  Q
    ||||||||||||||||||||||||||||||||    
T  14199862 gacatgacttgaacaatcaaactagtgttgag 14199893  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 105 - 216
Target Start/End: Complemental strand, 28313265 - 28313154
Alignment:
Q  105 catgacttcaacaatcaaaccagtgatgagtgaagacagactgagctgacatgacttgaacaatcaaactagtgttgagtgagatcttgctagtcggtcc 204  Q
    |||| ||| |||||||||||||||| ||| ||| |||   |||||||  ||| ||| |||||||||||  | |||||||||||||||||||||| ||||     
T  28313265 catggcttgaacaatcaaaccagtgttgaatgaggacgagctgagctagcattactcgaacaatcaaaacaatgttgagtgagatcttgctagttggtca 28313166  T
Q  205 agtaaaatatta 216  Q
    ||| ||||||||    
T  28313165 agtcaaatatta 28313154  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 325
Target Start/End: Complemental strand, 25242883 - 25242806
Alignment:
Q  248 tccacagttcaccaagcgtcgagcctgttaaagcatatacatttgttctttattcggtcaaccgatactagtccacaa 325  Q
    |||||||| ||||||||||| |||||||||| || || || |||||||||||  ||||| ||| ||||  ||||||||    
T  25242883 tccacagtccaccaagcgtcaagcctgttaaggcgtagacgtttgttctttacccggtcgacccataccggtccacaa 25242806  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 248 - 304
Target Start/End: Complemental strand, 24826209 - 24826153
Alignment:
Q  248 tccacagttcaccaagcgtcgagcctgttaaagcatatacatttgttctttattcgg 304  Q
    |||||||| ||||||||||| |||||||||| || || || ||||||||||| ||||    
T  24826209 tccacagtccaccaagcgtctagcctgttaaggcgtagacgtttgttctttaatcgg 24826153  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 99 - 197
Target Start/End: Original strand, 18855060 - 18855158
Alignment:
Q  99 agctggcatgacttcaacaatcaaaccagtgatgagtgaagacagactgagctgacatgacttgaacaatcaaactagtgttgagtgagatcttgctag 197  Q
    |||||||||||||| || | ||||| ||||| |||||||  |||  || ||||||||||||||||||| |||||| ||||||||||  ||||| |||||    
T  18855060 agctggcatgacttaaagagtcaaatcagtgttgagtgagaacaagcttagctgacatgacttgaacagtcaaaccagtgttgagttggatctcgctag 18855158  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 248 - 299
Target Start/End: Original strand, 12599801 - 12599852
Alignment:
Q  248 tccacagttcaccaagcgtcgagcctgttaaagcatatacatttgttcttta 299  Q
    |||||||| ||||||||||| |||||||||| ||||| || |||||||||||    
T  12599801 tccacagtccaccaagcgtcaagcctgttaaggcatagacgtttgttcttta 12599852  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 187
Target Start/End: Original strand, 24526437 - 24526525
Alignment:
Q  99 agctggcatgacttcaacaatcaaaccagtgatgagtgaagacagactgagctgacatgacttgaacaatcaaactagtgttgagtgag 187  Q
    ||||| |||||||| |||| ||||||||||| ||||||| ||||  |||||||  |||| ||| | || ||||||| ||||||||||||    
T  24526437 agctgacatgacttgaacagtcaaaccagtgttgagtgaggacaagctgagctttcatggcttaagcagtcaaacttgtgttgagtgag 24526525  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 266
Target Start/End: Complemental strand, 26567984 - 26567924
Alignment:
Q  206 gtaaaatattacaagttacttggtatggtcggtccatgttaatccacagttcaccaagcgt 266  Q
    ||||||||||||||||||| |||||||||| |||||||  | |||| |||| |||||||||    
T  26567984 gtaaaatattacaagttacatggtatggtctgtccatgccagtccatagtttaccaagcgt 26567924  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 183
Target Start/End: Complemental strand, 26568254 - 26568170
Alignment:
Q  99 agctggcatgacttcaacaatcaaaccagtgatgagtgaagacagactgagctgacatgacttgaacaatcaaactagtgttgag 183  Q
    |||||||||||||| |||  ||||| |||||| ||||| ||||   |||||||| |||||||| |||| |||||| |||||||||    
T  26568254 agctggcatgacttgaactgtcaaagcagtgacgagtggagacgagctgagctggcatgacttaaacagtcaaaccagtgttgag 26568170  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 99 - 183
Target Start/End: Complemental strand, 26568106 - 26568022
Alignment:
Q  99 agctggcatgacttcaacaatcaaaccagtgatgagtgaagacagactgagctgacatgacttgaacaatcaaactagtgttgag 183  Q
    |||||||||||||| || | |||||| |||| | || | ||||   || ||||||||||||||||||||||||| ||||| ||||    
T  26568106 agctggcatgacttgaaaagtcaaactagtgctaagaggagacgagctaagctgacatgacttgaacaatcaaattagtgctgag 26568022  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 239 - 299
Target Start/End: Original strand, 14513596 - 14513656
Alignment:
Q  239 ccatgttaatccacagttcaccaagcgtcgagcctgttaaagcatatacatttgttcttta 299  Q
    ||||| || |||||||| ||||||||||| |||||||||| || || || |||||||||||    
T  14513596 ccatgctagtccacagtccaccaagcgtcaagcctgttaaggcgtagacgtttgttcttta 14513656  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 13 - 221
Target Start/End: Original strand, 14977914 - 14978120
Alignment:
Q  13 ttgaacagtcgaacccatgttgagtgaagacgagctaagctggtatgatttgaacattcaaaccagttatgggtgaagacggtttgagctggcatgactt 112  Q
    ||||||||| |||||  | |||| |||||||||||| || |||  ||| ||||||| |||||||| |  ||  ||||||| |  |||||| || ||||||    
T  14977914 ttgaacagttgaaccattattgaatgaagacgagctgagttggcttgacttgaacagtcaaaccaatgttgaatgaagacaggctgagctagcctgactt 14978013  T
Q  113 caacaatcaaaccagtgatgagtgaagacagactgagctgacatgacttgaacaatcaaactagtgttgagtgagatcttgctagtcggtccagtaaaat 212  Q
     ||   ||||||||||| ||| |||||||   ||||| || | ||||||||||| ||||| |||||  || ||||||||| |||||  | |||||||| |    
T  14978014 aaattgtcaaaccagtgttgaatgaagacgagctgagttggcctgacttgaacagtcaaattagtgaaga-tgagatcttactagt-tgcccagtaaagt 14978111  T
Q  213 attacaagt 221  Q
    |||||||||    
T  14978112 attacaagt 14978120  T

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