View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10883_low_1 (Length: 471)
Name: NF10883_low_1
Description: NF10883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10883_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 280; Significance: 1e-156; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 170 - 465
Target Start/End: Complemental strand, 4383884 - 4383589
Alignment:
| Q |
170 |
catctttgacagcagagaagctgcattgtagtgtttcgattatatgcaattcttagtgttatagggtataatgttgtggttaaatactacaattccattg |
269 |
Q |
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| T |
4383884 |
catctttgacagcagagaagctgcattgtagtttttcgattatatgcaattcttagtgttatagggtataatgttgtggttaaatactacaattccattg |
4383785 |
T |
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| Q |
270 |
caagattaccttcctgtgctcgttgcacttttagctctactcgctttgctatgcttgatcgactatcagtgaatacaagtcgtacaccgcaggtcactgc |
369 |
Q |
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| T |
4383784 |
caagattaccttcctgtgctcgttgcacttttagctctactcgctttgctatgcttgatcgactatcagtgaatacaagtcgtaaaccgcaggtcactgc |
4383685 |
T |
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| Q |
370 |
ccagatgtaatgatgaaaacagaatcatttgcaaaacaatttaggttttatagctgatagaagtatttccatcatttgtcattaggttcttctcac |
465 |
Q |
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| T |
4383684 |
ccagatgtaatgatgaaaacagaatcatttgcaaaacaatttaggttttatagctgatagaagaatttccatcatttgtcattaggttcttatcac |
4383589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 17 - 162
Target Start/End: Complemental strand, 4384083 - 4383938
Alignment:
| Q |
17 |
cccttctggttgaacccaattctatcttgtatgtcgtcttcatcatcatcaatactaataagtttcatcttgagagtaggcattcattctgttgattgcc |
116 |
Q |
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| T |
4384083 |
cccttctggttgaacccaattctatcttgtatgtcgtcttcatcatcatcaatactaataagttccttcttgagagtaggcattcattctgttgattgcc |
4383984 |
T |
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| Q |
117 |
actgagtttctgttgtctatcatagtcataccaaagattacggagt |
162 |
Q |
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| T |
4383983 |
actgagtttctgttgtctatcatagtcatagcaaacattacggagt |
4383938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 182 - 269
Target Start/End: Complemental strand, 4768984 - 4768899
Alignment:
| Q |
182 |
cagagaagctgcattgtagtgtttcgattatatgcaattcttagtgttatagggtataatgttgtggttaaatactacaattccattg |
269 |
Q |
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| T |
4768984 |
cagagaagctgcattgttgtttttcgattat--gcaattcttagtgttatagggtacaatgctgtggttaaatactacaattcgattg |
4768899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 391 - 457
Target Start/End: Complemental strand, 4768841 - 4768774
Alignment:
| Q |
391 |
gaatcatttgcaaaacaatttaggtttta-tagctgatagaagtatttccatcatttgtcattaggtt |
457 |
Q |
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| T |
4768841 |
gaatcatttgcaaaacaatttatcttttagtacctgatagaagtatttccatcatttgtcattaggtt |
4768774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 267 - 315
Target Start/End: Complemental strand, 4385482 - 4385434
Alignment:
| Q |
267 |
ttgcaagattaccttcctgtgctcgttgcacttttagctctactcgctt |
315 |
Q |
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| T |
4385482 |
ttgcaagattaccttcatgtgctcgttgcacttttagctctgctcgctt |
4385434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 46520213 - 46520169
Alignment:
| Q |
23 |
tggttgaacccaattctatcttgtatgtcgtcttcatcatcatca |
67 |
Q |
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| T |
46520213 |
tggttgaatccaattcttccttgtatgtcctcttcatcatcatca |
46520169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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