View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10883_low_4 (Length: 254)
Name: NF10883_low_4
Description: NF10883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10883_low_4 |
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| [»] scaffold1653 (1 HSPs) |
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| [»] scaffold1033 (1 HSPs) |
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| [»] scaffold1029 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 35976687 - 35976931
Alignment:
| Q |
1 |
acagtagcagaagctgttgtgtctttgcctttgttttcagctacagaagctatagttgaagaagatgaagcagaatcatttataggagaaagattaagct |
100 |
Q |
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| T |
35976687 |
acagtagcagaagttgttgtgtctttgcctttgttttcagctacagaagctatagttgaagaagatgaagcagaatcatttataggagaaagattaagct |
35976786 |
T |
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| Q |
101 |
tcaaatcaacattagcagtttctgagaaacctctctttccacaactatttttaattggtgattctccgtgatcacctgcacctggaagaccgagccgtaa |
200 |
Q |
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| T |
35976787 |
tcaaatcaacattagcagtttctgagaaacctctctttccacaactatttttaacaggtgattctccgtgatcacctgcacctggaagaccgagtcgtaa |
35976886 |
T |
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| Q |
201 |
ctcggtctcctcaaaatttatcaagctgtacttgtctctctctgc |
245 |
Q |
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| T |
35976887 |
ctcggtctcctcaaaatttatcaagctgtacttgtctctctctgc |
35976931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1653 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: scaffold1653
Description:
Target: scaffold1653; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 21 - 154
Target Start/End: Original strand, 774 - 905
Alignment:
| Q |
21 |
gtctttgcctttgttttcagctacagaagctatagttgaagaagatgaagcagaatcatttataggagaaagattaagcttcaaatcaacattagcagtt |
120 |
Q |
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| T |
774 |
gtctttgcctttgtattcagctacataacctatagttgaagaaaataaaaca--atcgtttattggagaaagattaagcttgaaatcaacattagaagat |
871 |
T |
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| Q |
121 |
tctgagaaacctctctttccacaactatttttaa |
154 |
Q |
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| T |
872 |
tctgagaaacctctctttccacaactatttttaa |
905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1033 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold1033
Description:
Target: scaffold1033; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 28 - 170
Target Start/End: Complemental strand, 1727 - 1587
Alignment:
| Q |
28 |
cctttgttttcagctacagaagctatagttgaagaagatgaagcagaatcatttataggagaaagattaagcttcaaatcaacattagcagtttctgaga |
127 |
Q |
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| T |
1727 |
cctttgttttcgactaaagaaaatatatttgaagaagatgaaacataatcgtttattggagaaagattat--ttcaaatcaacattagcagtttctgata |
1630 |
T |
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| Q |
128 |
aacctctctttccacaactatttttaattggtgattctccgtg |
170 |
Q |
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| T |
1629 |
aacttctctttccagaacaatttttaactgatgattcttcgtg |
1587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1029 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold1029
Description:
Target: scaffold1029; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 28 - 170
Target Start/End: Complemental strand, 1727 - 1587
Alignment:
| Q |
28 |
cctttgttttcagctacagaagctatagttgaagaagatgaagcagaatcatttataggagaaagattaagcttcaaatcaacattagcagtttctgaga |
127 |
Q |
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||||||||||| ||| |||| |||| |||||||||||||| || |||| ||||| |||||||||||| |||||||||||||||||||||||||| | |
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| T |
1727 |
cctttgttttcgactaaagaaaatatatttgaagaagatgaaacataatcgtttattggagaaagattat--ttcaaatcaacattagcagtttctgata |
1630 |
T |
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| Q |
128 |
aacctctctttccacaactatttttaattggtgattctccgtg |
170 |
Q |
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| T |
1629 |
aacttctctttccagaacaatttttaactgatgattcttcgtg |
1587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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