View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10884_5 (Length: 405)
Name: NF10884_5
Description: NF10884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10884_5 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 13 - 405
Target Start/End: Original strand, 19172004 - 19172396
Alignment:
| Q |
13 |
aatatcaacaagaacacttctccttaacctatttgcataaagaacaacactaacaaactcttctatgtaaaccctaacatcatttcccaaaacagctttc |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
19172004 |
aatatcaacaagaacacttctccttaacctatttgcataaagaacaacactaacaaactcttctatgtaaaccctaacatcatttcccaaaacaactttc |
19172103 |
T |
|
| Q |
113 |
cctttattatcaccgcgatctttacacgaaaaccagtcaccaacaacgtgttcaacgaaacagccttccgcgcgtgtaagcctatcgttaagtgttggaa |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
19172104 |
cctttattatcaccgcgatctttacacgaaaaccagtcaccaacaacgtttttaatgaaacagccttccgcgcgtgtaagcctatcgttaagcgttggaa |
19172203 |
T |
|
| Q |
213 |
cgatggacttcaaaccgcactctatttgttccatacgtgttcttagggtttctgatggattcctccatgccatggctatttgccatggacgatcagaaga |
312 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
19172204 |
cgatggacttcaaaccgcactctatttgctccatacgtgttattagggtttctgatggattcctccacgccatggctatttgccatggacgatcagaaga |
19172303 |
T |
|
| Q |
313 |
cattgaaaccgatgaattatcattggtttcggtttcattgtcttcgtcgtcaagaaaagaacgagcaagattggtgaagatgaaaggatggag |
405 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19172304 |
cattgaaaccgatgaattatcattggtttcggtttcattgtcttcgtcgtcaagaaaagaacgagcaagattggtgaagatgaaaggatggag |
19172396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University