View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10884_6 (Length: 360)
Name: NF10884_6
Description: NF10884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10884_6 |
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Alignment Details
Target: chr3 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 22 - 161
Target Start/End: Original strand, 10469142 - 10469281
Alignment:
| Q |
22 |
catcatcattggcttcttcatcatcttcttctacttcctcatctctcagtttctgaatcgctgattcaactgcttttttgtatgattcagcagcgatttc |
121 |
Q |
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| T |
10469142 |
catcatcattggcttcttcatcatcttcttcaacttcctcatctctcagtttctgaatcgctgattcaactgcttttttgtatgagtcatcagcgattcc |
10469241 |
T |
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| Q |
122 |
acccggaattaacatccccctacaatgtaaccaccaccac |
161 |
Q |
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| T |
10469242 |
actcggaattaactttccactacaatgcaaccaccgccac |
10469281 |
T |
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Target: chr3; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 263 - 348
Target Start/End: Original strand, 10469383 - 10469465
Alignment:
| Q |
263 |
cgtatttattttattacaaattttggctgttaaaagaaatttctctgttatcagtgcaatagaaagcacggataacacatacacaa |
348 |
Q |
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| T |
10469383 |
cgtatttattttattagaaattttggctgttaaaagaaattaatctgttatccgtgcaatagaaagcac---taacacatacacaa |
10469465 |
T |
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