View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10884_7 (Length: 336)

Name: NF10884_7
Description: NF10884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10884_7
NF10884_7
[»] chr1 (7 HSPs)
chr1 (138-336)||(10996662-10996860)
chr1 (56-112)||(10996868-10996924)
chr1 (157-224)||(35109743-35109811)
chr1 (140-227)||(8281134-8281221)
chr1 (149-227)||(48591013-48591091)
chr1 (149-227)||(48600708-48600786)
chr1 (140-227)||(17345716-17345804)
[»] chr2 (2 HSPs)
chr2 (140-227)||(16388260-16388346)
chr2 (140-227)||(16388672-16388758)
[»] chr6 (4 HSPs)
chr6 (140-227)||(1115299-1115386)
chr6 (147-226)||(98972-99052)
chr6 (140-227)||(31077154-31077239)
chr6 (159-227)||(9036094-9036162)
[»] chr5 (3 HSPs)
chr5 (140-227)||(34842416-34842502)
chr5 (140-176)||(2630087-2630123)
chr5 (140-227)||(30899669-30899756)
[»] scaffold0076 (1 HSPs)
scaffold0076 (156-227)||(16193-16264)
[»] chr8 (2 HSPs)
chr8 (147-225)||(8863842-8863920)
chr8 (140-227)||(7493266-7493351)
[»] chr4 (3 HSPs)
chr4 (156-227)||(873737-873808)
chr4 (189-227)||(22660085-22660123)
chr4 (193-227)||(34670946-34670980)


Alignment Details
Target: chr1 (Bit Score: 175; Significance: 3e-94; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 138 - 336
Target Start/End: Complemental strand, 10996860 - 10996662
Alignment:
Q  138 accttgaggctactttattcattgattactactttctttactctacatatgtaagttttattggtgtgattgtttgttcgaattcacaacggttattgtt 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10996860 accttgaggctactttattcattgattactactttctttactctacatatgtaagttttattggtgtgattgtttgttcgaattcacaacggttattgtt 10996761  T
Q  238 agtttgtttgatcgagagactaataacactattatttgcatgatttctatctgaaatgacttttannnnnnnnaatataaactgatcaatccattaatt 336  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||    
T  10996760 agtttgtttgatcgagagactaataacactattatttgcatgatttctatctgaaatgacttttattttttttaatataaactgatcaatccattaatt 10996662  T

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Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 56 - 112
Target Start/End: Complemental strand, 10996924 - 10996868
Alignment:
Q  56 atctccgttgctatgaatctgcatgtggtgttgcttcacacttaattttaggactat 112  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10996924 atcttcgttgctatgaatctgcatgtggtgttgcttcacacttaattttaggactat 10996868  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 157 - 224
Target Start/End: Original strand, 35109743 - 35109811
Alignment:
Q  157 cattgattactactttctttactctacatatgtaagttttattggtgtgatt-gtttgttcgaattcac 224  Q
    ||||||||||||||| |||| ||||||| || ||||||||||||||||||||  |||||||||||||||    
T  35109743 cattgattactacttcctttcctctacacatctaagttttattggtgtgattattttgttcgaattcac 35109811  T

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Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 140 - 227
Target Start/End: Complemental strand, 8281221 - 8281134
Alignment:
Q  140 cttgaggctactttattcattgattactactttctttactctacatatgtaagttttattggtgtgattgtttgttcgaattcacaac 227  Q
    |||||| |||||||||||||||||||||| || ||||| |||||| || |||||| ||||||| | ||| || ||| |||||||||||    
T  8281221 cttgagactactttattcattgattactatttcctttaatctacacatctaagttctattggtattattattagtttgaattcacaac 8281134  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 227
Target Start/End: Original strand, 48591013 - 48591091
Alignment:
Q  149 actttattcattgattactactttctttactctacatatgtaagttttattggtgtgattgtttgttcgaattcacaac 227  Q
    ||||| |||||||||||||| ||  ||||||  ||| || |||||||||||| ||||||| ||| || |||||||||||    
T  48591013 actttgttcattgattactatttcttttacttcacacatctaagttttattgatgtgattatttatttgaattcacaac 48591091  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 227
Target Start/End: Original strand, 48600708 - 48600786
Alignment:
Q  149 actttattcattgattactactttctttactctacatatgtaagttttattggtgtgattgtttgttcgaattcacaac 227  Q
    ||||| |||||||||||||| ||  ||||||  ||| || |||||||||||| ||||||| ||| || |||||||||||    
T  48600708 actttgttcattgattactatttcttttacttcacacatctaagttttattgatgtgattatttatttgaattcacaac 48600786  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 140 - 227
Target Start/End: Original strand, 17345716 - 17345804
Alignment:
Q  140 cttgaggctacttt-attcattgattactactttctttactctacatatgtaagttttattggtgtgattgtttgttcgaattcacaac 227  Q
    |||||||||||||| | |||||||||||||||| |||| ||| ||| || |  |||| ||||||||| ||  |||| ||||||||||||    
T  17345716 cttgaggctacttttactcattgattactacttcctttgctccacacatctttgtttcattggtgtggtttcttgtccgaattcacaac 17345804  T

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Target: chr2 (Bit Score: 52; Significance: 9e-21; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 140 - 227
Target Start/End: Complemental strand, 16388346 - 16388260
Alignment:
Q  140 cttgaggctactttattcattgattactactttctttactctacatatgtaagttttattggtgtgattgtttgttcgaattcacaac 227  Q
    |||||| |||||||||||||||||||||||||||||| ||| ||| || |||| ||||| ||||||||| ||||||||||||||||||    
T  16388346 cttgagactactttattcattgattactactttctttgctccacacatctaag-tttatcggtgtgattatttgttcgaattcacaac 16388260  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 140 - 227
Target Start/End: Original strand, 16388672 - 16388758
Alignment:
Q  140 cttgaggctactttattcattgattactactttctttactctacatatgtaagttttattggtgtgattgtttgttcgaattcacaac 227  Q
    |||||| |||||||| ||||||||||||||| | ||| ||| ||| || |||| ||||||| ||||||| |||||| |||||||||||    
T  16388672 cttgagactactttactcattgattactactatttttgctccacacatctaag-tttattgatgtgattatttgtttgaattcacaac 16388758  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 140 - 227
Target Start/End: Original strand, 1115299 - 1115386
Alignment:
Q  140 cttgaggctactttattcattgattactactttctttactctacatatgtaagttttattggtgtgattgtttgttcgaattcacaac 227  Q
    ||||| ||||||||  ||||||||||||||||  ||||||| | |||| ||||||||||||||| |||| |||| || ||||||||||    
T  1115299 cttgaagctactttgctcattgattactacttcttttactccatatatctaagttttattggtgcgattatttgctcaaattcacaac 1115386  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 226
Target Start/End: Complemental strand, 99052 - 98972
Alignment:
Q  147 ctactttattcattgattactactttctttactctacatatgtaagttttattggtgtga-ttgtttgttcgaattcacaa 226  Q
    |||||||  |||||||||||||||| |||||||| |||  | ||||||||||||| |||| || |||| ||||||||||||    
T  99052 ctactttgctcattgattactacttcctttactccacacgtttaagttttattggcgtgatttatttgctcgaattcacaa 98972  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 227
Target Start/End: Original strand, 31077154 - 31077239
Alignment:
Q  140 cttgaggctactttattcattgattactactttctttactctacatatgtaagttttattggtgtgattgtttgttcgaattcacaac 227  Q
    ||||||||||||||| ||||||||||||| || |||| ||||||| || |  |||| |||| ||||||  |||||| |||||||||||    
T  31077154 cttgaggctactttactcattgattactatttccttttctctacacatcttcgtttcattgatgtgat--tttgttggaattcacaac 31077239  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 159 - 227
Target Start/End: Complemental strand, 9036162 - 9036094
Alignment:
Q  159 ttgattactactttctttactctacatatgtaagttttattggtgtgattgtttgttcgaattcacaac 227  Q
    |||||||||||||  ||| ||| |||||| |||| ||||||||||| ||| |||| || ||||||||||    
T  9036162 ttgattactacttcatttgctccacatatctaagatttattggtgtaattatttgatcaaattcacaac 9036094  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 140 - 227
Target Start/End: Complemental strand, 34842502 - 34842416
Alignment:
Q  140 cttgaggctactttattcattgattactactttctttactctacatatgtaagttttattggtgtgattgt-ttgttcgaattcacaac 227  Q
    ||||||||||||||| || ||||||||||||| |||||||| ||| || |||| ||||||||||||||| | |||||| ||||||||||    
T  34842502 cttgaggctactttactc-ttgattactacttcctttactccacacatctaag-tttattggtgtgattttattgttctaattcacaac 34842416  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 140 - 176
Target Start/End: Complemental strand, 2630123 - 2630087
Alignment:
Q  140 cttgaggctactttattcattgattactactttcttt 176  Q
    |||||||||||||||||||||| ||||||||| ||||    
T  2630123 cttgaggctactttattcattgcttactacttccttt 2630087  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 140 - 227
Target Start/End: Complemental strand, 30899756 - 30899669
Alignment:
Q  140 cttgaggctactttattcattgattactactttcttta-ctctacatatgtaagttttattggtgtgattgtttgttcgaattcacaac 227  Q
    ||||||||||||||  ||||||||||||| |||||||| ||| ||| || |||||||||||| | || ||  ||||| |||||||||||    
T  30899756 cttgaggctactttgctcattgattacta-tttctttagctccacacatctaagttttattgatatgttttattgtttgaattcacaac 30899669  T

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Target: scaffold0076 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 156 - 227
Target Start/End: Original strand, 16193 - 16264
Alignment:
Q  156 tcattgattactactttctttactctacatatgtaagttttattggtgtgattgtttgttcgaattcacaac 227  Q
    |||||||||||||||| |||| ||| ||| || |||||||||||||||| ||| || |||| ||||||||||    
T  16193 tcattgattactacttcctttgctcgacacatctaagttttattggtgtaattattagttcaaattcacaac 16264  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 147 - 225
Target Start/End: Original strand, 8863842 - 8863920
Alignment:
Q  147 ctactttattcattgattactactttctttactctacatatgtaagttttattggtgtgattgtttgttcgaattcaca 225  Q
    |||||||||||||| ||||  |||| ||||  |  ||| || |||||||||||||||||||| ||||||||||||||||    
T  8863842 ctactttattcattaattagcacttcctttgtttcacacatttaagttttattggtgtgattatttgttcgaattcaca 8863920  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 227
Target Start/End: Original strand, 7493266 - 7493351
Alignment:
Q  140 cttgaggctactttattcattgattactactttctttactctacatatgtaagttttattggtgtgattgtttgttcgaattcacaac 227  Q
    |||||| ||||||||  ||||||||||||||| |||| ||| ||| ||   |||||||||||||||||  ||||| ||||||||||||    
T  7493266 cttgagactactttacacattgattactacttcctttgctccacacatcatagttttattggtgtgat--tttgtccgaattcacaac 7493351  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 156 - 227
Target Start/End: Original strand, 873737 - 873808
Alignment:
Q  156 tcattgattactactttctttactctacatatgtaagttttattggtgtgattgtttgttcgaattcacaac 227  Q
    ||||||||||| |||| | |||||||| | || |||||||||||||||| ||| ||||||  ||||||||||    
T  873737 tcattgattacaacttccattactctatacatctaagttttattggtgtaattatttgtttaaattcacaac 873808  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 189 - 227
Target Start/End: Original strand, 22660085 - 22660123
Alignment:
Q  189 taagttttattggtgtgattgtttgttcgaattcacaac 227  Q
    ||||||| |||||||||||| ||||||||||||||||||    
T  22660085 taagtttcattggtgtgattatttgttcgaattcacaac 22660123  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 227
Target Start/End: Original strand, 34670946 - 34670980
Alignment:
Q  193 ttttattggtgtgattgtttgttcgaattcacaac 227  Q
    |||||||||||||||| ||||||||||||||||||    
T  34670946 ttttattggtgtgattatttgttcgaattcacaac 34670980  T

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