View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10885_high_1 (Length: 448)
Name: NF10885_high_1
Description: NF10885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10885_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 19 - 438
Target Start/End: Original strand, 37630320 - 37630740
Alignment:
| Q |
19 |
ggctgtacatgaatgatgaaggacaagttgggttatgggacaataatgatcataagcataagtggtcaatctttgaaagaatgtaggcctgaacttatca |
118 |
Q |
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| T |
37630320 |
ggctgtacatgaatgatgaaggacaagttgggttatgggacaataatgatcataagcataagtggtcaatctttgaaagaaagtaggcctgaacttatca |
37630419 |
T |
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| Q |
119 |
acagtataaccaccaaatggnnnnnnnnn--tcaatacagggaccacatttttagtagtcgcttaaaatctttgttatttgcgcaaggtaactagtagtc |
216 |
Q |
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|| ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||||| ||||| ||| || |
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| T |
37630420 |
acggtataaccaccaaatggaagaaaaaaaatcaatacagggaccacatttttagtagttgcttaaaatctttgttttttgcgcaag-taactggtaatc |
37630518 |
T |
|
| Q |
217 |
aaaagttagagattaatcatgtagaaatgnnnnnnnnnnnnnnnnncgaataatttaatggttagagctcacattatacgcaaggtaactaatagtcaaa |
316 |
Q |
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||||||||||||||||||| ||||||||| ||| |||| |||||||||||| |||| ||||||||||||||||||||||||||| |
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| T |
37630519 |
aaaagttagagattaatcaggtagaaatgtttttctttttctttttcgagtaatctaatggttagagatcacgttatacgcaaggtaactaatagtcaaa |
37630618 |
T |
|
| Q |
317 |
agttagagattaatctggtagaatgtttgtttacttaagggtttacatcttctaattaattattaactagacttgtacctgcgcgttgcacgggcgcaag |
416 |
Q |
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||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
37630619 |
agttagaaattaatttggtagaatgtttgtttacttaagggtttacatcttctaattaattattaactagacttgtacctgcgcgttgcacgggcacaag |
37630718 |
T |
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| Q |
417 |
tttgtcccgtcctcattctctg |
438 |
Q |
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|||||| |||||||||||||| |
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| T |
37630719 |
tttgtcttgtcctcattctctg |
37630740 |
T |
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