View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10885_low_10 (Length: 312)
Name: NF10885_low_10
Description: NF10885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10885_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 17 - 296
Target Start/End: Original strand, 3172665 - 3172944
Alignment:
| Q |
17 |
ttaagatatcttaaatgcctcaattttccaattgaatcacagaacgacttacttaaagaacaagacaacttcaagacgcgtaagtatttgaattttgaaa |
116 |
Q |
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| T |
3172665 |
ttaagatatcttaaatgcctcaattttccaattgaatcacagaacgacttacttaaagaacaagacaacttcaagacgcgtaagtatttgaattttgaaa |
3172764 |
T |
|
| Q |
117 |
taaaagacaattccttctcattccaagtctcccaa-tattggaaaacaaaatcaaagttcgcatcctgattgcatccaccagactttaacaaaccaatat |
215 |
Q |
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| T |
3172765 |
taaaagacaattccttttcattccaagtctcccaattattggaaaacaaaatcaaagttcgcatcctgattgcatccacc-gactttaacaaaccaatat |
3172863 |
T |
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| Q |
216 |
catcacttttcaacattacatgcattggactacctacaattannnnnnnctcactatccacataacaacaatcattgccag |
296 |
Q |
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| T |
3172864 |
catcacttttcaacattacacgcattggactacctacaattgtttttttctcactatccacataacaacaatcattgccag |
3172944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 19 - 246
Target Start/End: Original strand, 3169095 - 3169322
Alignment:
| Q |
19 |
aagatatcttaaatgcctcaattttccaattgaatcacagaacgacttacttaaagaacaa---gacaacttcaagacgcgtaagtatttgaattttgaa |
115 |
Q |
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| T |
3169095 |
aagatatcttaaatgcttcaattttacaattgaatcacacaac---ttacataaagaacaatgtgatagcttcaagacgcgtaaatatttgaattttgaa |
3169191 |
T |
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| Q |
116 |
ataaaagacaattccttctcattcc-aagtctcccaatattggaaaacaaaatcaaagttcgcatcctgattgcatccaccagactttaacaaaccaata |
214 |
Q |
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| T |
3169192 |
ataatagacatgtcttcctcattcctaaacgtcttaaggttgggcatcaaaatcaaagtacgcagcctgcttgcatccacc-gactctaacaaaccaata |
3169290 |
T |
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| Q |
215 |
tcatcacttttcaacattacatgcattggact |
246 |
Q |
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| T |
3169291 |
tcatccattttcatcattatatgcatgggact |
3169322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 117
Target Start/End: Original strand, 3141075 - 3141107
Alignment:
| Q |
85 |
cttcaagacgcgtaagtatttgaattttgaaat |
117 |
Q |
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| T |
3141075 |
cttcaagacgcgtaagtatttgaattttgaaat |
3141107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 119
Target Start/End: Original strand, 3281329 - 3281432
Alignment:
| Q |
16 |
gttaagatatcttaaatgcctcaattttccaattgaatcacagaacgacttacttaaagaacaa---gacaacttcaagacgcgtaagtatttgaatttt |
112 |
Q |
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| T |
3281329 |
gttaagatatcttaaatgtttcaattttccaattgaatta---gacaacttgcttaaagaacaatatgacagcatcaaaacacgtaaacatttgaatttt |
3281425 |
T |
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| Q |
113 |
gaaataa |
119 |
Q |
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||||||| |
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| T |
3281426 |
gaaataa |
3281432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 11 - 254
Target Start/End: Complemental strand, 7160737 - 7160494
Alignment:
| Q |
11 |
cataggttaagatatcttaaatgcctcaattttccaattgaatcacagaacgacttacttaaagaacaa---gacaacttcaagacgcgtaagtatttga |
107 |
Q |
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|||| ||||||||||||||||||| |||||||||| ||||| ||||| | | ||||||||||||||| || | || ||||||||||||||||||| |
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| T |
7160737 |
cataagttaagatatcttaaatgcttcaattttccgattgattcacacacc---ttacttaaagaacaacatgatatctataagacgcgtaagtatttga |
7160641 |
T |
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| Q |
108 |
attttgaaataaaagacaattccttctcattccaagtctc-ccaatattggaaaacaaaatcaaagttcgcatcctgattgcatccaccagactttaaca |
206 |
Q |
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| T |
7160640 |
attttaaaataacagatacttccttctcgttccaattctctgaaatgttggtaagcaaaattaaagttcgcaacttgcttgcatcca-atgattctaaca |
7160542 |
T |
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| Q |
207 |
aaccaatatcatcacttttcaacattacatgcattggactacctacaa |
254 |
Q |
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|||||||| |||||||||||| ||||||||||| ||||| ||||||| |
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| T |
7160541 |
aaccaatagcatcacttttcaccattacatgcacgggacttcctacaa |
7160494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 85 - 239
Target Start/End: Original strand, 3918067 - 3918221
Alignment:
| Q |
85 |
cttcaagacgcgtaagtatttgaattttgaaataaaagacaattccttctcattccaagtctcccaa-tattggaaaacaaaatcaaagttcgcatcctg |
183 |
Q |
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|||||| || |||||||||||||||||||| |||| | ||||||||||||||||| | |||| || | ||||| ||||||||||||||||||||| | |
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| T |
3918067 |
cttcaatacacgtaagtatttgaattttgatataacaaacaattccttctcattcatactctctgaattgttggacaacaaaatcaaagttcgcatcttt |
3918166 |
T |
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| Q |
184 |
attgcatccaccagactttaacaaaccaatatcatcacttttcaacattacatgca |
239 |
Q |
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|||||| || |||| |||||||||||| | ||||||| |||||||||||||| |
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| T |
3918167 |
cttgcattca-atgactccaacaaaccaatagcttcactttgcaacattacatgca |
3918221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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