View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10885_low_15 (Length: 274)
Name: NF10885_low_15
Description: NF10885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10885_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 107; Significance: 1e-53; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 158 - 268
Target Start/End: Original strand, 41759287 - 41759397
Alignment:
| Q |
158 |
ccagacactgagacacattttcaatcaaaagcgtaggtacaacaatggatataactaaccatcttaagtttaagtggatatatcccctttcaatcatgtt |
257 |
Q |
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| T |
41759287 |
ccagacactgagacacattttcaatcaaaagcgtaggtacaacaatggatataactaaccatcttaagtttaagtggatatatcccctttcaatcatgtt |
41759386 |
T |
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| Q |
258 |
tttcttctcac |
268 |
Q |
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|||||| |||| |
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| T |
41759387 |
tttcttatcac |
41759397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 87 - 160
Target Start/End: Original strand, 41759012 - 41759085
Alignment:
| Q |
87 |
tgaatcaaatcaaaccaagaggaaaaaacagtaatacgaactaataagcctattatgccctgttttgaagtcca |
160 |
Q |
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| T |
41759012 |
tgaatcaaatcaaaccaagaggaaaaaacagtaatacgaactagtaagcctattatgccctattttgaagtcca |
41759085 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 63
Target Start/End: Original strand, 41758758 - 41758804
Alignment:
| Q |
17 |
aaaggaagctgcatgtaataacacatacatacgtacatatatgagta |
63 |
Q |
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| T |
41758758 |
aaaggaagctgcatttaataacacatacatacgtacatatatgagta |
41758804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 46
Target Start/End: Original strand, 41754532 - 41754562
Alignment:
| Q |
16 |
aaaaggaagctgcatgtaataacacatacat |
46 |
Q |
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| T |
41754532 |
aaaaggaagctgcatgtaataacacatacat |
41754562 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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