View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10885_low_17 (Length: 255)
Name: NF10885_low_17
Description: NF10885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10885_low_17 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 156 - 255
Target Start/End: Original strand, 34306374 - 34306473
Alignment:
| Q |
156 |
taatatttattttcaaacataattagacatatacacttagcgtaaccacctagtagtcatcaacaatagaacaaacataagttaggtttgacagtcaaag |
255 |
Q |
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| T |
34306374 |
taatatttattttcaaacataattagacatatacacttagcgtaaccacctagtagtcatcaacaatagaacaaacataagttaggtttgacagtcaaag |
34306473 |
T |
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Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 15 - 80
Target Start/End: Original strand, 34306310 - 34306376
Alignment:
| Q |
15 |
cataggtgacagggagcatacttttag-ttacaatcaaataactatttttataaaataaacacataa |
80 |
Q |
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| T |
34306310 |
cataggtcacagggagcatactttttggttacaatcaaataactatttttataaaataaacacataa |
34306376 |
T |
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