View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10885_low_21 (Length: 232)
Name: NF10885_low_21
Description: NF10885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10885_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 39630670 - 39630882
Alignment:
| Q |
1 |
taaacaagacacaaggcttctatctttctaattttatctggtaatgcattctttctgattcatcttttaatgcaggaggatgtgcagctcatggttgaaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
39630670 |
taaacaagacacaaggcttctatctttctaattttatctggtaatgcattctttctgattcatcttttaatgcaggaagatgtgcagctcatggttgaaa |
39630769 |
T |
|
| Q |
101 |
caggccttgatgcctataggttttccatttcttggtcaagattgataccaagtatttaactgaactaaaaactttagtacatatcgatgaatgatgaaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
39630770 |
caggccttgatgcctataggttttccatttcttggtcaagattgataccaagtatttaactgaacttaaaactttagtacatatcgatgaatgatgaaat |
39630869 |
T |
|
| Q |
201 |
ttaacgttcttta |
213 |
Q |
| |
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||||||||||||| |
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| T |
39630870 |
ttaacgttcttta |
39630882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 39641456 - 39641667
Alignment:
| Q |
1 |
taaacaagacacaaggcttctatctttctaattttatctggtaatgcattctttctgattcatcttttaatgcaggaggatgtgcagctcatggttgaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
39641456 |
taaacaagacacaaggcttctatctttctaattttgtctagtaatgcattctttatgattcatcttttaatgcaggaagatgtgcagctcatggttgaaa |
39641555 |
T |
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| Q |
101 |
caggccttgatgcctataggttttccatttcttggtcaagattgataccaagtatttaactgaactaaaaactttagtacatatcgatgaatgatgaaat |
200 |
Q |
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|||| ||||| |||||||| |||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||| ||||||||||| |||||| |
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| T |
39641556 |
caggtcttgaagcctatagattttccatttcttggtcaagattgataccaagtattccactgaact-taaactttaatacagatcgatgaatggtgaaat |
39641654 |
T |
|
| Q |
201 |
ttaacgttcttta |
213 |
Q |
| |
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|| |||||||||| |
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| T |
39641655 |
ttgacgttcttta |
39641667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 29121827 - 29122038
Alignment:
| Q |
1 |
taaacaagacacaaggcttctatctttctaattttatctggtaatgcattctttctgattcatcttttaatgcaggaggatgtgcagctcatggttgaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |
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| T |
29121827 |
taaacaagacacaaggcttctatctttctaattttgtccggtaatgcattctttctgattcatcttttaatgcaggaagatgtgcaactcatggttgaaa |
29121926 |
T |
|
| Q |
101 |
caggccttgatgcctataggttttccatttcttggtcaagattgataccaagtatttaactgaactaaaaactttagtacatatcgatgaatgatgaaat |
200 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |||||| |
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| T |
29121927 |
caggcctcgatgcctataggttttccatttcttggtcaagattgataccaagtattctactgaact-taaactttagtacatatcgatgaatggtgaaat |
29122025 |
T |
|
| Q |
201 |
ttaacgttcttta |
213 |
Q |
| |
|
|||| |||||||| |
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|
| T |
29122026 |
ttaaagttcttta |
29122038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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