View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10885_low_4 (Length: 401)
Name: NF10885_low_4
Description: NF10885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10885_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 6 - 396
Target Start/End: Original strand, 30947643 - 30948045
Alignment:
| Q |
6 |
aatgagaaagtcaatttagtgtcaacatagtttgcaattgttgcaacaatgttgttcgtcgcttgattttgttagtgaaaccatatctaattgctaattg |
105 |
Q |
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| T |
30947643 |
aatgagaaagtcaatttagtgtcaacatagtttgcaattgttgcaacaatgttgttcgtcgcttgattttgttagtgaaagcatatctaattgccaattg |
30947742 |
T |
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| Q |
106 |
ttataattatggacaaagttgtttatcgatatgaccattatttatatgattatgatatacatgttgctttttgtaatttgcatcatcgtatattttttgg |
205 |
Q |
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| T |
30947743 |
ttataagtatggacaaagttgtttatcgatatgaccattatttatatgattatgatatacatgttgctttttgtaatttgcatcatcgtatattttttgg |
30947842 |
T |
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| Q |
206 |
ttgtttctatctatcatcaccatcagcatta------------tcatcatatcatgtattagtttattaatcatgtataatacaatccaattataacgtc |
293 |
Q |
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| T |
30947843 |
ctgtttctatctatcatcaccatcagcattatcatcgttgtcgtcatcatatcatgtattagtttattaatcatgtataatacaatccaattataacttt |
30947942 |
T |
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| Q |
294 |
gtgtaatgcagaactggtgttcctttataagctgatattttgaggcatttaatttaatgttgttttctatagatcgctgaatattttgtttatctctgct |
393 |
Q |
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| T |
30947943 |
gtgtaatgcagaactggtgttcctttataagctgatattttgagtcatttaatttaatgttgttttctatagatcgctgaatattttgtttatttctgtt |
30948042 |
T |
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| Q |
394 |
cct |
396 |
Q |
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| T |
30948043 |
cct |
30948045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 84; Significance: 8e-40; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 31 - 241
Target Start/End: Complemental strand, 6911063 - 6910842
Alignment:
| Q |
31 |
catagtttgcaattgttgcaacaatgttgttcgtcgcttgattttgttagtgaaa-ccat-atctaattgcta----------attgttataattatgga |
118 |
Q |
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| T |
6911063 |
catagtttgcaactgttgcaagattgttgtccttcgcttgattttgttagtgaaagccattatctaattgctacttgagatggattgttataagtaagga |
6910964 |
T |
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| Q |
119 |
caaagttgtttatcgatatgaccattatttatatgattatgatatacatgttgctttttgtaatttgcatcatcgtatattttttggttgtttctatcta |
218 |
Q |
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| T |
6910963 |
caca-ttgtttactaatatggccattatttatatgattatgatatatgtgttgttttttgtaatttgcatcatcgtgtattttttggctgtttctatcga |
6910865 |
T |
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| Q |
219 |
tcatcaccatcagcattatcatc |
241 |
Q |
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| T |
6910864 |
tcatcaccgtcggcattatcatc |
6910842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 268 - 386
Target Start/End: Complemental strand, 6910563 - 6910452
Alignment:
| Q |
268 |
gtataatacaatccaattataacgtcgtgtaatgcagaactggtgttcctttataagctgatattttgaggcatttaatttaatgttgttttctatagat |
367 |
Q |
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| T |
6910563 |
gtataatataattcaattataacgtcatgtaatgtagaactggtgttcctttgtaaactgatattttgaggca-------taaggttgttttatatagat |
6910471 |
T |
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| Q |
368 |
cgctgaatattttgtttat |
386 |
Q |
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| T |
6910470 |
cgttgaatattttgtttat |
6910452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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