View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10885_low_5 (Length: 392)
Name: NF10885_low_5
Description: NF10885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10885_low_5 |
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| [»] scaffold0617 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 374
Target Start/End: Complemental strand, 656014 - 655640
Alignment:
| Q |
1 |
tcagaggaggaagaaacaatgatggtaataacagaagaagatccagtcacatacaatgaagctgcgaaagnnnnnnnn-tggagagatgcgatggctaaa |
99 |
Q |
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| T |
656014 |
tcagaggaggaagaagcaatgatgataataacagaagaagatccagtcacatacaatgaagctgcgaaagaaaaaaaaatggagagatgcgatggctaaa |
655915 |
T |
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| Q |
100 |
gagattgactcgatagagaaaaatggcacgtggagacttacaaccttgccgaatggagtcaaagctattggagttaaatgggtttttaaaaccaagctta |
199 |
Q |
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| T |
655914 |
gagattgactcgatagagaaaaatggcacgtggagacttacaaccttgccgaatggagtcaaagctattggagttaaatgggtttttaaaaccaagctta |
655815 |
T |
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| Q |
200 |
acgaacatggtaatgtagagaagtacaaagctaggttggtggccaaaggatatgcgcaacaatatgggattgactacacataggtgtttgctccggtggc |
299 |
Q |
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| T |
655814 |
acgaacatggtaatgtagagaagtacaaagctaggttggtggccaaaggatatgcgcaacaatatgggattgactacacagaggtgtttgctccggtggc |
655715 |
T |
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| Q |
300 |
tcgtcttgatacaataagacttatcctggcaactgcagctcaaaacaagtgggaagtataccagttagatgtcaa |
374 |
Q |
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| T |
655714 |
ttgtcttgatacaataagacttatcctggcaactgcagctcaaaacaagtgggaagtataccagttagatgtcaa |
655640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 158 - 299
Target Start/End: Original strand, 14246499 - 14246640
Alignment:
| Q |
158 |
tcaaagctattggagttaaatgggtttttaaaaccaagcttaacgaacatggtaatgtagagaagtacaaagctaggttggtggccaaaggatatgcgca |
257 |
Q |
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| T |
14246499 |
tcaaacctattggagtcaagtgggtatttaaaacaaagttaaatgaagatggtactgtggagaagttcaaagcgaggctggtagcaaaagggtatgcaca |
14246598 |
T |
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| Q |
258 |
acaatatgggattgactacacataggtgtttgctccggtggc |
299 |
Q |
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| T |
14246599 |
acgccatggtattgactatactgaggtgtttgctccagtggc |
14246640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0617 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0617
Description:
Target: scaffold0617; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 158 - 299
Target Start/End: Complemental strand, 6927 - 6786
Alignment:
| Q |
158 |
tcaaagctattggagttaaatgggtttttaaaaccaagcttaacgaacatggtaatgtagagaagtacaaagctaggttggtggccaaaggatatgcgca |
257 |
Q |
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| T |
6927 |
tcaaacctattggagtcaagtgggtatttaaaacaaagttaaatgaagatggtactgtggagaagttcaaagcgaggctggtagcaaaagggtatgcaca |
6828 |
T |
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| Q |
258 |
acaatatgggattgactacacataggtgtttgctccggtggc |
299 |
Q |
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| T |
6827 |
acgccatggtattgactatactgaggtgtttgctccagtggc |
6786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0617; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 299
Target Start/End: Complemental strand, 1483 - 1342
Alignment:
| Q |
158 |
tcaaagctattggagttaaatgggtttttaaaaccaagcttaacgaacatggtaatgtagagaagtacaaagctaggttggtggccaaaggatatgcgca |
257 |
Q |
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| T |
1483 |
tcaaacctattggagtcaagtgggtatttaaaacaaagttaaatgaagatggtactatggagaagttcaaagtgaggctggtagcaaaagggtatgcaca |
1384 |
T |
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| Q |
258 |
acaatatgggattgactacacataggtgtttgctccggtggc |
299 |
Q |
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| T |
1383 |
acgccatggtattgactatactgaggtatttgctccggtggc |
1342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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