View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10885_low_7 (Length: 383)
Name: NF10885_low_7
Description: NF10885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10885_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 151; Significance: 8e-80; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 184 - 367
Target Start/End: Complemental strand, 31276923 - 31276738
Alignment:
| Q |
184 |
aatttaagttcggtatagatctcgattg--gagtcaaagaccctttaactgcgtgaacgtgtgtagtcggttattgcatggagtgttggtttaaaataca |
281 |
Q |
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| T |
31276923 |
aatttaaattcggtatagatttctattgaagagtcaaagaccctttaactgcgtgaatgtgtctagtcggttattgcatggagtgttggtttaaaataca |
31276824 |
T |
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| Q |
282 |
cagagtcacaaattaattataataaggttaacgttttgggtttttggttgttttggttattgaaaccatttaaagaacgatataac |
367 |
Q |
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| T |
31276823 |
cacagtcacaaattaattataataaggttaacgttttgggtttttggttgttttggttattgaaaccatttaaagaacgatataac |
31276738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 29 - 174
Target Start/End: Complemental strand, 31279285 - 31279140
Alignment:
| Q |
29 |
gaccatacaagtttgaaagttattaaagcaaataaaacatagccactaaaccccaagagagaaaaagaatacaccctcaaaatgccttctaaaaacttgt |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31279285 |
gaccatacaagtttgaaagttattaaagcaaataaaacatagccactaaaccccaagagagaaaaagaatacaccctcaaaatgccttctaaaaacttgt |
31279186 |
T |
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| Q |
129 |
tgatatactcaatatagttgtacatgaaacttagtttaaactacaa |
174 |
Q |
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| T |
31279185 |
tgatatactcaatatagttgtacatgaaacttagtttaaactacaa |
31279140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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