View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10885_low_8 (Length: 370)
Name: NF10885_low_8
Description: NF10885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10885_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 19 - 357
Target Start/End: Complemental strand, 15662280 - 15661942
Alignment:
| Q |
19 |
aaacaatgataacacagaatctcctaattatttagataagcctgcattcctcgtatttgctttatccgactccatggcacttatctcgtcttcaacttca |
118 |
Q |
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| T |
15662280 |
aaacaatgataacaaagaatctcctaattatttagataaacctgcattcctcgtatttgctttatccgactccatggcacttatctcgtcttcaacttca |
15662181 |
T |
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| Q |
119 |
atcttgatatttctatccatccttatctcgcgatatgcggagcaagattttctcaagtcactgcctttgaagttgatatctggactagtggcattgtttg |
218 |
Q |
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| T |
15662180 |
atcttgatatttctatccatccttatctcgcgatatgcggagcaagattttctcaagtcactgcctttgaagttgatatctggactagtggcattgtttg |
15662081 |
T |
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| Q |
219 |
tgtctataatcagcatgatgatagcatttagtagtgctttctacataacatattatcatggtttgaaatgggttcctaattttatttctgttcttgcatt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15662080 |
tgtctataatcagcatgatgatagcatttagtagtgctttctacataacatattatcatggtttgaaatgggttcctaattttatttctgttcttgcatt |
15661981 |
T |
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| Q |
319 |
tttaccgataccgttgtttatatgtttacagttttctct |
357 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
15661980 |
tttaccgataccgttgtttatatgtttacagttttctct |
15661942 |
T |
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