View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10885_low_9 (Length: 356)

Name: NF10885_low_9
Description: NF10885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10885_low_9
NF10885_low_9
[»] chr7 (13 HSPs)
chr7 (7-248)||(7553329-7553570)
chr7 (212-312)||(38609281-38609382)
chr7 (212-313)||(28369273-28369374)
chr7 (210-309)||(5578951-5579054)
chr7 (212-340)||(321936-322065)
chr7 (212-340)||(39894794-39894919)
chr7 (211-340)||(3120773-3120904)
chr7 (212-314)||(23839292-23839393)
chr7 (277-340)||(1011471-1011535)
chr7 (277-340)||(1012333-1012397)
chr7 (221-340)||(22797523-22797642)
chr7 (213-340)||(7932285-7932410)
chr7 (216-248)||(29907213-29907245)
[»] chr8 (11 HSPs)
chr8 (212-306)||(32690288-32690382)
chr8 (212-340)||(32593514-32593643)
chr8 (212-340)||(33493845-33493975)
chr8 (212-314)||(7066193-7066295)
chr8 (211-314)||(8471890-8471993)
chr8 (212-314)||(8472668-8472770)
chr8 (211-300)||(33085281-33085370)
chr8 (212-312)||(18471251-18471351)
chr8 (211-314)||(8194356-8194458)
chr8 (210-340)||(32051650-32051781)
chr8 (277-315)||(539485-539523)
[»] chr2 (16 HSPs)
chr2 (211-340)||(2007121-2007251)
chr2 (212-312)||(14931949-14932049)
chr2 (212-314)||(23220958-23221060)
chr2 (212-340)||(24201232-24201360)
chr2 (212-338)||(25432744-25432870)
chr2 (213-306)||(13220127-13220220)
chr2 (212-314)||(17625741-17625844)
chr2 (212-314)||(17670128-17670231)
chr2 (213-337)||(33896789-33896914)
chr2 (263-340)||(37469290-37469368)
chr2 (106-211)||(1139005-1139113)
chr2 (211-284)||(3304544-3304617)
chr2 (253-310)||(35942124-35942181)
chr2 (212-248)||(38500599-38500635)
chr2 (212-312)||(11493767-11493874)
chr2 (207-246)||(21933194-21933233)
[»] chr1 (8 HSPs)
chr1 (212-340)||(32754961-32755090)
chr1 (212-340)||(45395795-45395923)
chr1 (211-340)||(25104767-25104896)
chr1 (216-314)||(46859639-46859737)
chr1 (211-312)||(37827839-37827940)
chr1 (277-340)||(1908254-1908318)
chr1 (212-315)||(14613883-14613985)
chr1 (212-248)||(19972614-19972650)
[»] chr4 (17 HSPs)
chr4 (211-340)||(41223927-41224057)
chr4 (210-340)||(39437171-39437301)
chr4 (211-340)||(47442068-47442198)
chr4 (212-340)||(37078990-37079118)
chr4 (212-340)||(49529487-49529613)
chr4 (212-340)||(37078261-37078389)
chr4 (212-312)||(44897972-44898072)
chr4 (263-312)||(6848691-6848740)
chr4 (212-306)||(28501913-28502004)
chr4 (214-340)||(50848170-50848298)
chr4 (211-290)||(16184704-16184783)
chr4 (212-335)||(22383977-22384096)
chr4 (211-245)||(32476734-32476768)
chr4 (211-299)||(34249593-34249673)
chr4 (212-298)||(50853897-50853983)
chr4 (212-248)||(13188076-13188112)
chr4 (224-310)||(34611880-34611963)
[»] chr3 (9 HSPs)
chr3 (216-314)||(26218770-26218868)
chr3 (212-340)||(20269908-20270037)
chr3 (212-308)||(48596856-48596952)
chr3 (225-310)||(55242339-55242424)
chr3 (214-295)||(28767629-28767710)
chr3 (220-310)||(109621-109711)
chr3 (263-339)||(40268368-40268445)
chr3 (225-306)||(44399629-44399709)
chr3 (281-340)||(28767474-28767534)
[»] chr5 (9 HSPs)
chr5 (211-309)||(27828404-27828502)
chr5 (215-312)||(7518858-7518955)
chr5 (212-340)||(43432135-43432264)
chr5 (212-340)||(4446382-4446511)
chr5 (211-300)||(23498376-23498465)
chr5 (233-312)||(27827593-27827672)
chr5 (277-340)||(4445531-4445595)
chr5 (253-312)||(27827445-27827504)
chr5 (266-337)||(9479568-9479641)
[»] chr6 (1 HSPs)
chr6 (214-340)||(15869399-15869526)


Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 7 - 248
Target Start/End: Original strand, 7553329 - 7553570
Alignment:
Q  7 gaagcagagactcaacattgatcgtcgtcttgaaaagtttttgaggtgcactgctgaatgatttcatcaatttgcaaactttgatttaagaatgtatcat 106  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  7553329 gaagcaaagactcaacattgatcgtcgtcttgaaaagtttttgaggtgcactactgaatgatttcatcaatttgcaaactttgatttaagaatgtatcat 7553428  T
Q  107 gcatcttttgcatcatttctttgttgttgaacaattatgtaacactcgctttatatattcatactaacaaacttgaaatttaatagcagtatgcacgatg 206  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7553429 gcatcttttgcatcatttctctgttgttgaacaattatgtaacactcgctttatatattcatactaacaaacttgaaatttaatagcagtatgcacgatg 7553528  T
Q  207 acatctgttaaaattaagaatctttagatattcctttaattg 248  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  7553529 acatctgttaaaattaagaatctttagatattcctttaattg 7553570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 212 - 312
Target Start/End: Original strand, 38609281 - 38609382
Alignment:
Q  212 tgttaaaattaagaatctttagatattcc-tttaattgcattacttcctaagttgattgttattattcctagagtatacaacttcctaggctagtgctta 310  Q
    ||||||||||||||||||||||||||||| |||||||| |  ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||    
T  38609281 tgttaaaattaagaatctttagatattccctttaattgtacaacttcctaaattgattgttattactcctagagtatacaacttcctaggctagtgcgta 38609380  T
Q  311 ct 312  Q
    ||    
T  38609381 ct 38609382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 212 - 313
Target Start/End: Original strand, 28369273 - 28369374
Alignment:
Q  212 tgttaaaattaagaatctttagatattcctttaattgcattacttcctaagttgattgttattattcctagagtatacaacttcctaggctagtgcttac 311  Q
    ||||||||||||||||||||||||||||||||||||| |  ||||||||  |||||||  |||| |||||||||||||||||||| ||||||||||||||    
T  28369273 tgttaaaattaagaatctttagatattcctttaattgtacaacttcctagattgattgccattactcctagagtatacaacttccgaggctagtgcttac 28369372  T
Q  312 ta 313  Q
    ||    
T  28369373 ta 28369374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 210 - 309
Target Start/End: Original strand, 5578951 - 5579054
Alignment:
Q  210 tctgttaaaattaagaatctttagatattcctttaattgcatt----acttcctaagttgattgttattattcctagagtatacaacttcctaggctagt 305  Q
    ||||||||||||||||||||||||||||||||||||||| | |    ||||||||  ||||||||||||| | |||||||||||||||||||||||||||    
T  5578951 tctgttaaaattaagaatctttagatattcctttaattgaactgatgacttcctagattgattgttattacttctagagtatacaacttcctaggctagt 5579050  T
Q  306 gctt 309  Q
    ||||    
T  5579051 gctt 5579054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 212 - 340
Target Start/End: Original strand, 321936 - 322065
Alignment:
Q  212 tgttaaaattaagaatctttagatattcctttaattgcattacttcctaagttgattgttattattcctagagtatacaacttcctaggctagtgcttac 311  Q
    |||||||||||||||||||||||||||||||||| |  |  ||||||||  |||||| |||| | ||||||||||| ||||||||| || ||||||||||    
T  321936 tgttaaaattaagaatctttagatattcctttaactatacaacttcctagattgattattatcactcctagagtattcaacttcctgggttagtgcttac 322035  T
Q  312 taaa-aagcattctatctatttattgtaaa 340  Q
    |||| |||||||| || |||||||||||||    
T  322036 taaataagcattcaatgtatttattgtaaa 322065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 212 - 340
Target Start/End: Original strand, 39894794 - 39894919
Alignment:
Q  212 tgttaaaattaagaatctttagatattcctttaattgcattacttcctaagttgattgttattattcctagagtatacaacttcctaggctagtgcttac 311  Q
    ||||||||||||||||||| ||||||||||||||||| || |||||||   ||||||||||||    ||||||||||||||||||||||||||||| |||    
T  39894794 tgttaaaattaagaatcttcagatattcctttaattgtataacttcctgcattgattgttatt----ctagagtatacaacttcctaggctagtgcctac 39894889  T
Q  312 t-aaaaagcattctatctatttattgtaaa 340  Q
    | |  |||||||| ||  ||||||||||||    
T  39894890 tcattaagcattcaatgcatttattgtaaa 39894919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 211 - 340
Target Start/End: Complemental strand, 3120904 - 3120773
Alignment:
Q  211 ctgttaaaattaagaatctttagatattcctttaattgcattacttcctaagttgattgttattattcct-agagtatacaacttcctaggctagtgctt 309  Q
    ||||||||| ||||||| |||||||||||||||||||| |  ||||||||  |||||||| |||| || | ||||| | ||||||||||  |||||||||    
T  3120904 ctgttaaaagtaagaatatttagatattcctttaattgtacaacttcctagattgattgtcattactcttaagagtgttcaacttcctaatctagtgctt 3120805  T
Q  310 actaaa-aagcattctatctatttattgtaaa 340  Q
    |||||| |||||||| || |||||||||||||    
T  3120804 actaaataagcattcaatgtatttattgtaaa 3120773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 212 - 314
Target Start/End: Original strand, 23839292 - 23839393
Alignment:
Q  212 tgttaaaattaagaatctttagatattcctttaattgcattacttcctaagttgattgttattattcctagagtatacaacttcctaggctagtgcttac 311  Q
    ||||||| |||||||||||||||||||||||| |||  |  ||||||||  |||||||| || | |||||||||||  ||||||||||||||||||||||    
T  23839292 tgttaaagttaagaatctttagatattcctttgattatacaacttcctagattgattgt-ataactcctagagtatttaacttcctaggctagtgcttac 23839390  T
Q  312 taa 314  Q
    |||    
T  23839391 taa 23839393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 277 - 340
Target Start/End: Original strand, 1011471 - 1011535
Alignment:
Q  277 tcctagagtatacaacttcctaggctagtgcttactaaa-aagcattctatctatttattgtaaa 340  Q
    ||||||||||| ||||||||||||||||||||||||||| |||||||| || |||||||||||||    
T  1011471 tcctagagtattcaacttcctaggctagtgcttactaaataagcattcaatgtatttattgtaaa 1011535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 277 - 340
Target Start/End: Original strand, 1012333 - 1012397
Alignment:
Q  277 tcctagagtatacaacttcctaggctagtgcttactaaa-aagcattctatctatttattgtaaa 340  Q
    ||||||||||| ||||||||||||||||||||||||||| |||||||| || |||||||||||||    
T  1012333 tcctagagtattcaacttcctaggctagtgcttactaaataagcattcaatgtatttattgtaaa 1012397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 221 - 340
Target Start/End: Original strand, 22797523 - 22797642
Alignment:
Q  221 taagaatctttagatattcctttaattgcattacttcctaagttgattgttattattcctagagtatacaacttcctaggctagtgcttact-aaaaagc 319  Q
    ||||||||||||||||||| |||||| | |  ||| ||||  |||||||||||||  ||||||||||||||||||||| ||||||| ||||| |  ||||    
T  22797523 taagaatctttagatattc-tttaatggtacaactccctagattgattgttattacccctagagtatacaacttcctaagctagtgtttactcattaagc 22797621  T
Q  320 attctatctatttattgtaaa 340  Q
    |||| || |||||||||||||    
T  22797622 attcaatgtatttattgtaaa 22797642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 213 - 340
Target Start/End: Original strand, 7932285 - 7932410
Alignment:
Q  213 gttaaaattaagaatctttagatattcctttaattgcattacttcctaagttgattgttattattcctagagtatacaacttcctaggctagtgcttact 312  Q
    |||||||||||||| ||  ||||||||||||||||| |  ||||||||  |||||||| | || ||||||  ||||||||||||||||||||||||||||    
T  7932285 gttaaaattaagaa-ctacagatattcctttaattgtacaacttcctagattgattgtcactactcctag--tatacaacttcctaggctagtgcttact 7932381  T
Q  313 -aaaaagcattctatctatttattgtaaa 340  Q
     |  |||||||| ||  ||||||||||||    
T  7932382 cattaagcattcaattaatttattgtaaa 7932410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 248
Target Start/End: Original strand, 29907213 - 29907245
Alignment:
Q  216 aaaattaagaatctttagatattcctttaattg 248  Q
    |||||||| ||||||||||||||||||||||||    
T  29907213 aaaattaaaaatctttagatattcctttaattg 29907245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 212 - 306
Target Start/End: Complemental strand, 32690382 - 32690288
Alignment:
Q  212 tgttaaaattaagaatctttagatattcctttaattgcattacttcctaagttgattgttattattcctagagtatacaacttcctaggctagtg 306  Q
    ||||||||||||||||||||||| ||||||||||||| || |||||||| |||||||||||||| ||||||||||||||||||||||||||||||    
T  32690382 tgttaaaattaagaatctttagacattcctttaattgtataacttcctaggttgattgttattactcctagagtatacaacttcctaggctagtg 32690288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 212 - 340
Target Start/End: Original strand, 32593514 - 32593643
Alignment:
Q  212 tgttaaaattaagaatctttagatattcctttaattgcattacttcctaagttgattgttattattcctagagtatacaacttcctaggctagtgcttac 311  Q
    |||||||||||||||||| |||||||||||||||||| |  ||||||||  |||||||||  || |||||||||||||||||||||||||||||||||||    
T  32593514 tgttaaaattaagaatctatagatattcctttaattgtacaacttcctagattgattgttcctactcctagagtatacaacttcctaggctagtgcttac 32593613  T
Q  312 taa-aaagcattctatctatttattgtaaa 340  Q
    |||  |||||||| || |||||||| ||||    
T  32593614 taattaagcattcaatgtatttattataaa 32593643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 212 - 340
Target Start/End: Complemental strand, 33493975 - 33493845
Alignment:
Q  212 tgttaaaattaagaatctttagatat--tcctttaattgcattacttcctaagttgattgttattattcctagagtatacaacttcctaggctagtgctt 309  Q
    ||||||||||||||||||||||||||  ||||||||||  |  ||||||||  |||| |||||||| ||||||||||| |||||| ||||||||||||||    
T  33493975 tgttaaaattaagaatctttagatatattcctttaattctacaacttcctagattgagtgttattactcctagagtattcaactttctaggctagtgctt 33493876  T
Q  310 actaaaaagcattctatctatttattgtaaa 340  Q
    |||||| ||||||| || |||||||||||||    
T  33493875 actaaatagcattcaatgtatttattgtaaa 33493845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 212 - 314
Target Start/End: Complemental strand, 7066295 - 7066193
Alignment:
Q  212 tgttaaaattaagaatctttagatattcctttaattgcattacttcctaagttgattgttattattcctagagtatacaacttcctaggctagtgcttac 311  Q
    ||||||| ||||||||||||||||||||||||||||  |  ||||||||  ||||||||| ||| ||||||||||| |||||||||||||||||||||||    
T  7066295 tgttaaagttaagaatctttagatattcctttaattatacaacttcctagattgattgttgttactcctagagtattcaacttcctaggctagtgcttac 7066196  T
Q  312 taa 314  Q
    |||    
T  7066195 taa 7066193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 211 - 314
Target Start/End: Original strand, 8471890 - 8471993
Alignment:
Q  211 ctgttaaaattaagaatctttagatattcctttaattgcattacttcctaagttgattgttattattcctagagtatacaacttcctaggctagtgctta 310  Q
    |||||||| |||||||||||||||||| |||||||||| |  ||||||||  ||||||||||||| || |||||||| ||||| ||||||||||||||||    
T  8471890 ctgttaaagttaagaatctttagatatccctttaattgtacaacttcctagattgattgttattactcgtagagtattcaactccctaggctagtgctta 8471989  T
Q  311 ctaa 314  Q
    ||||    
T  8471990 ctaa 8471993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 212 - 314
Target Start/End: Original strand, 8472668 - 8472770
Alignment:
Q  212 tgttaaaattaagaatctttagatattcctttaattgcattacttcctaagttgattgttattattcctagagtatacaacttcctaggctagtgcttac 311  Q
    ||||||| |||||||||||||||||| |||||||||| |  ||||||||  ||| ||||||||| ||| ||||||| ||||||| |||||||||||||||    
T  8472668 tgttaaagttaagaatctttagatatccctttaattgtacaacttcctagattggttgttattactccaagagtattcaacttcttaggctagtgcttac 8472767  T
Q  312 taa 314  Q
    |||    
T  8472768 taa 8472770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 211 - 300
Target Start/End: Original strand, 33085281 - 33085370
Alignment:
Q  211 ctgttaaaattaagaatctttagatattcctttaattgcattacttcctaagttgattgttattattcctagagtatacaacttcctagg 300  Q
    ||||||||||||||||||||||||| |||||||||||| | |||||||||  ||||||| ||||| |||||| |||||||||||| ||||    
T  33085281 ctgttaaaattaagaatctttagattttcctttaattgtactacttcctagattgattgctattactcctagggtatacaacttcttagg 33085370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 212 - 312
Target Start/End: Complemental strand, 18471351 - 18471251
Alignment:
Q  212 tgttaaaattaagaatctttagatattcctttaattgcattacttcctaagttgattgttattattcctagagtatacaacttcctaggctagtgcttac 311  Q
    ||||||| |||| |||||||| || |||||||||||| |  ||||||||  ||||||||||||| | ||| |||||||||||||||||| ||||||||||    
T  18471351 tgttaaagttaacaatctttacatgttcctttaattgtacaacttcctagattgattgttattacttctaaagtatacaacttcctagggtagtgcttac 18471252  T
Q  312 t 312  Q
    |    
T  18471251 t 18471251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 211 - 314
Target Start/End: Original strand, 8194356 - 8194458
Alignment:
Q  211 ctgttaaaattaagaatctttagatattcctttaattgcattacttcctaagttgattgttattattcctagagtatacaacttcctaggctagtgctta 310  Q
    |||||||| |||||| ||||||| ||||| |||||||| |  ||||||||  ||||||||||||| |||| |||||| | ||||||||||||||||||||    
T  8194356 ctgttaaagttaagagtctttaggtattcttttaattgtaccacttcctagattgattgttattactccttgagtattc-acttcctaggctagtgctta 8194454  T
Q  311 ctaa 314  Q
    ||||    
T  8194455 ctaa 8194458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 210 - 340
Target Start/End: Complemental strand, 32051781 - 32051650
Alignment:
Q  210 tctgttaaaattaagaatctttagatattcctttaattgcattacttcctaagttgattgttattattcctagagtatacaacttcctaggctagtgctt 309  Q
    ||||||||||||||||||||| ||||||||||||  ||  |  |||  |||  |||||| |||||| || |||| |||||||||||||||||||||||||    
T  32051781 tctgttaaaattaagaatcttcagatattcctttggttatacaactctctagattgatttttattactcttagactatacaacttcctaggctagtgctt 32051682  T
Q  310 actaa-aaagcattctatctatttattgtaaa 340  Q
    |||||  |||| ||| || |||||||||||||    
T  32051681 actaattaagcgttcaatgtatttattgtaaa 32051650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 277 - 315
Target Start/End: Complemental strand, 539523 - 539485
Alignment:
Q  277 tcctagagtatacaacttcctaggctagtgcttactaaa 315  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  539523 tcctagagtattcaacttcctaggctagtgcttactaaa 539485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 2e-34; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 211 - 340
Target Start/End: Complemental strand, 2007251 - 2007121
Alignment:
Q  211 ctgttaaaattaagaatctttagatattcctttaattgcattacttcctaagttgattgttattattcctagagtatacaacttcctaggctagtgctta 310  Q
    |||||||||||||||||||||||||||||||||||||| |  ||||||||  ||||||||||||| ||||| ||||||||| ||||||||||| ||||||    
T  2007251 ctgttaaaattaagaatctttagatattcctttaattgtacaacttcctagattgattgttattactcctatagtatacaatttcctaggctaatgctta 2007152  T
Q  311 ctaa-aaagcattctatctatttattgtaaa 340  Q
    ||||  |||||||| || |||||||||||||    
T  2007151 ctaattaagcattcgatgtatttattgtaaa 2007121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 212 - 312
Target Start/End: Complemental strand, 14932049 - 14931949
Alignment:
Q  212 tgttaaaattaagaatctttagatattcctttaattgcattacttcctaagttgattgttattattcctagagtatacaacttcctaggctagtgcttac 311  Q
    ||||||||||||||||||||||||||| ||||||||| |  |||||||| ||||||| |||||| |||||||||||||| ||||||||||||||||||||    
T  14932049 tgttaaaattaagaatctttagatatttctttaattgtacaacttcctaggttgatttttattactcctagagtatacatcttcctaggctagtgcttac 14931950  T
Q  312 t 312  Q
    |    
T  14931949 t 14931949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 212 - 314
Target Start/End: Original strand, 23220958 - 23221060
Alignment:
Q  212 tgttaaaattaagaatctttagatattcctttaattgcattacttcctaagttgattgttattattcctagagtatacaacttcctaggctagtgcttac 311  Q
    ||||||||||||||||||||||||||||||||||||| |  ||||||||  ||||||| ||||| ||||||||||| |||||||||| ||||||||||||    
T  23220958 tgttaaaattaagaatctttagatattcctttaattgtacaacttcctagattgattgatattactcctagagtattcaacttcctatgctagtgcttac 23221057  T
Q  312 taa 314  Q
    |||    
T  23221058 taa 23221060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 212 - 340
Target Start/End: Original strand, 24201232 - 24201360
Alignment:
Q  212 tgttaaaattaagaatctttagatattcctttaattgcattacttcctaagttgattgttattattcctagagtatacaacttcctaggctagtgcttac 311  Q
    ||||||| |||||||||||||||||| |||||||||| |  ||||||||  |||||||| || | ||||||||||| |||||||||||||||||||||||    
T  24201232 tgttaaagttaagaatctttagatatccctttaattgtacaacttcctagattgattgt-ataactcctagagtattcaacttcctaggctagtgcttac 24201330  T
Q  312 taaa-aagcattctatctatttattgtaaa 340  Q
    |||| |||||||| || |||||||||||||    
T  24201331 taaataagcattcaatgtatttattgtaaa 24201360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 212 - 338
Target Start/End: Complemental strand, 25432870 - 25432744
Alignment:
Q  212 tgttaaaattaagaatctttagatattcctttaattgcattacttcctaagttgattgttattattcctagagtatacaacttcctaggctagtgcttac 311  Q
    |||||||||||| || ||||| || |||||||||||| |  ||||||||  ||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  25432870 tgttaaaattaaaaa-ctttatatgttcctttaattgtacaacttcctagattgattgttattactcctagagtatacaatttcctaggctagtgcttac 25432772  T
Q  312 taaa-aagcattctatctatttattgta 338  Q
    |||| |||||||| || |||||||||||    
T  25432771 taaataagcattcaatgtatttattgta 25432744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 213 - 306
Target Start/End: Complemental strand, 13220220 - 13220127
Alignment:
Q  213 gttaaaattaagaatctttagatattcctttaattgcattacttcctaagttgattgttattattcctagagtatacaacttcctaggctagtg 306  Q
    |||||||||||||||||||||||||||||||||||| |  ||||||||  || |||||||||| ||||||||||||||||||| ||||||||||    
T  13220220 gttaaaattaagaatctttagatattcctttaattgtacaacttcctagtttaattgttattactcctagagtatacaacttcttaggctagtg 13220127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 212 - 314
Target Start/End: Original strand, 17625741 - 17625844
Alignment:
Q  212 tgttaaaa-ttaagaatctttagatattcctttaattgcattacttcctaagttgattgttattattcctagagtatacaacttcctaggctagtgctta 310  Q
    |||||||| |||||||||||||||||||  ||||| || |  ||||||||  ||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  17625741 tgttaaaagttaagaatctttagatatttgtttaactgtacaacttcctagattgattgttattactcctagagtattcaacttcctaggctagtgctta 17625840  T
Q  311 ctaa 314  Q
    ||||    
T  17625841 ctaa 17625844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 212 - 314
Target Start/End: Original strand, 17670128 - 17670231
Alignment:
Q  212 tgttaaaa-ttaagaatctttagatattcctttaattgcattacttcctaagttgattgttattattcctagagtatacaacttcctaggctagtgctta 310  Q
    |||||||| |||||||||||||||||||  ||||| || |  ||||||||  ||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  17670128 tgttaaaagttaagaatctttagatatttgtttaactgtacaacttcctagattgattgttattactcctagagtattcaacttcctaggctagtgctta 17670227  T
Q  311 ctaa 314  Q
    ||||    
T  17670228 ctaa 17670231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 213 - 337
Target Start/End: Complemental strand, 33896914 - 33896789
Alignment:
Q  213 gttaaaattaagaatctttagatattcctttaattgcattacttcctaagttgattgttattattcctagagtatacaacttcctaggctagtgcttact 312  Q
    ||||||||||||||||| |||||||||||||||||| |   |||||||  |||||| || ||| | ||||||||||| ||||| ||||||||||||||||    
T  33896914 gttaaaattaagaatctctagatattcctttaattgtacagcttcctagattgattatttttactgctagagtatactacttcttaggctagtgcttact 33896815  T
Q  313 aa-aaagcattctatctatttattgt 337  Q
    ||  |||||||| || ||||||||||    
T  33896814 aattaagcattcaatgtatttattgt 33896789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 263 - 340
Target Start/End: Complemental strand, 37469368 - 37469290
Alignment:
Q  263 ttgattgttattattcctagagtatacaacttcctaggctagtgcttactaa-aaagcattctatctatttattgtaaa 340  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||| |||  |||||||| || |||||||||||||    
T  37469368 ttgattgttattactcctagagtatacaacttcctaggctagtgcttattaattaagcattcaatgtatttattgtaaa 37469290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 106 - 211
Target Start/End: Original strand, 1139005 - 1139113
Alignment:
Q  106 tgcatcttttgcatcatttctttgttgttgaacaattatgtaacactcgctttatatattca-tactaacaaacttgaaattt--aatagcagtatgcac 202  Q
    ||||| ||||||||||||||| ||| ||||||||| |||| ||||||| ||||||| ||||| | | ||||||| | ||||||  ||||||||||||||     
T  1139005 tgcatgttttgcatcatttctctgtagttgaacaactatggaacactcactttatacattcatttccaacaaacgtaaaatttaaaatagcagtatgcat 1139104  T
Q  203 gatgacatc 211  Q
    ||| |||||    
T  1139105 gattacatc 1139113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 211 - 284
Target Start/End: Original strand, 3304544 - 3304617
Alignment:
Q  211 ctgttaaaattaagaatctttagatattcctttaattgcattacttcctaagttgattgttattattcctagag 284  Q
    |||| ||||||| ||||||| ||||||||||||||||| |  ||||||||  ||||||||||||| ||||||||    
T  3304544 ctgtaaaaattaggaatcttcagatattcctttaattgtacaacttcctagattgattgttattactcctagag 3304617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 253 - 310
Target Start/End: Complemental strand, 35942181 - 35942124
Alignment:
Q  253 acttcctaagttgattgttattattcctagagtatacaacttcctaggctagtgctta 310  Q
    ||||||||  |||||||||||||||||||||||| ||||||||||||| ||| |||||    
T  35942181 acttcctagattgattgttattattcctagagtaaacaacttcctaggttagggctta 35942124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 212 - 248
Target Start/End: Original strand, 38500599 - 38500635
Alignment:
Q  212 tgttaaaattaagaatctttagatattcctttaattg 248  Q
    |||||||||||||||||||||||||||||||||||||    
T  38500599 tgttaaaattaagaatctttagatattcctttaattg 38500635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 212 - 312
Target Start/End: Original strand, 11493767 - 11493874
Alignment:
Q  212 tgttaaaattaagaatctttagatattcctttaattgcattacttcctaagttgattgttattattcctagagtat-------acaacttcctaggctag 304  Q
    ||||||||||||||||||| ||| ||| ||||||||| |  ||||||||  ||  ||||||||| ||||||| |||       |||||||||||||||||    
T  11493767 tgttaaaattaagaatcttaagaaattactttaattgtacaacttcctagatttgttgttattactcctagaatatacattagacaacttcctaggctag 11493866  T
Q  305 tgcttact 312  Q
    ||||||||    
T  11493867 tgcttact 11493874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 207 - 246
Target Start/End: Original strand, 21933194 - 21933233
Alignment:
Q  207 acatctgttaaaattaagaatctttagatattcctttaat 246  Q
    ||||||| ||||||||||||| ||||||||||||||||||    
T  21933194 acatctggtaaaattaagaatgtttagatattcctttaat 21933233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 7e-34; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 212 - 340
Target Start/End: Complemental strand, 32755090 - 32754961
Alignment:
Q  212 tgttaaaattaagaatctttagatattcctttaattgcattacttcctaagttgattgttattattcctagagtatacaacttcctaggctagtgcttac 311  Q
    ||||||||||||||||||| |||||||||| |||||| |  ||||||||  ||||||||||||| ||||||||||||||||||||| || ||||||||||    
T  32755090 tgttaaaattaagaatcttcagatattcctctaattgtaaaacttcctagattgattgttattactcctagagtatacaacttccttgggtagtgcttac 32754991  T
Q  312 taaa-aagcattctatctatttattgtaaa 340  Q
    |||| |||||||| || |||||||||||||    
T  32754990 taaataagcattcaatttatttattgtaaa 32754961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 212 - 340
Target Start/End: Original strand, 45395795 - 45395923
Alignment:
Q  212 tgttaaaattaagaatctttagatattcctttaattgcattacttcctaagttgattgttattattcctagagtatacaacttcctaggctagtgcttac 311  Q
    ||||||| |||||||||||||||||| |||||||||| |  ||||||||  |||||||| || | ||||||||||| |||||||||||||||||||||||    
T  45395795 tgttaaagttaagaatctttagatatccctttaattgtacgacttcctagattgattgt-ataactcctagagtattcaacttcctaggctagtgcttac 45395893  T
Q  312 taaa-aagcattctatctatttattgtaaa 340  Q
    |||| |||||||| || |||||||||||||    
T  45395894 taaataagcattcaatgtatttattgtaaa 45395923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 211 - 340
Target Start/End: Complemental strand, 25104896 - 25104767
Alignment:
Q  211 ctgttaaaattaagaatctttagatattcctttaattgcattacttcctaagttgattgttattattcctagagtatacaacttcctaggctagtgctta 310  Q
    |||||||| |||||||||||||||||| |||||||||| |  ||||||||  |||||| | || | ||||||||||| ||||||||||||||||||||||    
T  25104896 ctgttaaagttaagaatctttagatatccctttaattgtacaacttcctagattgattat-ataactcctagagtattcaacttcctaggctagtgctta 25104798  T
Q  311 ctaaa-aagcattctatctatttattgtaaa 340  Q
    ||||| |||||||| || |||||||||||||    
T  25104797 ctaaataagcattcaatgtatttattgtaaa 25104767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 216 - 314
Target Start/End: Complemental strand, 46859737 - 46859639
Alignment:
Q  216 aaaattaagaatctttagatattcctttaattgcattacttcctaagttgattgttattattcctagagtatacaacttcctaggctagtgcttactaa 314  Q
    ||||||||||||||||||||||||||||||||| |  ||||||||  ||||||||| ||| |||||||||||||||||| |||| |||||||| |||||    
T  46859737 aaaattaagaatctttagatattcctttaattgtacaacttcctagattgattgttgttactcctagagtatacaactttctagcctagtgctcactaa 46859639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 211 - 312
Target Start/End: Original strand, 37827839 - 37827940
Alignment:
Q  211 ctgttaaaattaagaatctttagatattcctttaattgcattacttcctaagttgattgttattattcctagagtatacaacttcctaggctagtgctta 310  Q
    |||| |||||||||||||||||||||||| |||||||| |  ||||||||  | ||||||||||| ||||| | ||||||||||||||||||||||||||    
T  37827839 ctgtaaaaattaagaatctttagatattcatttaattgtacaacttcctagatcgattgttattactcctacaatatacaacttcctaggctagtgctta 37827938  T
Q  311 ct 312  Q
    ||    
T  37827939 ct 37827940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 277 - 340
Target Start/End: Original strand, 1908254 - 1908318
Alignment:
Q  277 tcctagagtatacaacttcctaggctagtgcttactaaa-aagcattctatctatttattgtaaa 340  Q
    ||||||||||| ||||||||||||||||||||||||||| |||||||| || |||||||||||||    
T  1908254 tcctagagtattcaacttcctaggctagtgcttactaaataagcattcaatgtatttattgtaaa 1908318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 212 - 315
Target Start/End: Original strand, 14613883 - 14613985
Alignment:
Q  212 tgttaaaattaagaatctttagatattcctttaattgcattacttcctaagttgattgttattattcctagagtatacaacttcctaggctagtgcttac 311  Q
    ||||||| |||||||||||||||||| |||||||||| |  ||||  ||  ||||||| ||| | ||||||||||| |||||| ||||||| ||||||||    
T  14613883 tgttaaagttaagaatctttagatatccctttaattgtacaactttttagattgattg-tataactcctagagtattcaactttctaggctggtgcttac 14613981  T
Q  312 taaa 315  Q
    ||||    
T  14613982 taaa 14613985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 212 - 248
Target Start/End: Complemental strand, 19972650 - 19972614
Alignment:
Q  212 tgttaaaattaagaatctttagatattcctttaattg 248  Q
    ||||||||||||||||||| ||| |||||||||||||    
T  19972650 tgttaaaattaagaatcttcagaaattcctttaattg 19972614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 4e-32; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 211 - 340
Target Start/End: Original strand, 41223927 - 41224057
Alignment:
Q  211 ctgttaaaattaagaatctttagatattcctttaattgcattacttcctaagttgattgttattattcctagagtatacaacttcctaggctagtgctta 310  Q
    |||||||| |||||||||||||||||| ||||||| || |  ||||||||  ||||||||||||| ||| |||||||||||||||||||||||||||| |    
T  41223927 ctgttaaagttaagaatctttagatatgcctttaactgtacaacttcctagattgattgttattactccaagagtatacaacttcctaggctagtgctca 41224026  T
Q  311 ctaaa-aagcattctatctatttattgtaaa 340  Q
    ||||| |||||||| || |||||||||||||    
T  41224027 ctaaataagcattcaatgtatttattgtaaa 41224057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 210 - 340
Target Start/End: Original strand, 39437171 - 39437301
Alignment:
Q  210 tctgttaaaattaagaatctttagatattcctttaattgcattacttcctaagttgattgttattattcctagagtatacaacttcctaggctagtgctt 309  Q
    ||||||||| |||||||||||||||||| |||||||||| |  ||||||||  |||||| |||| | ||||||||||| |||||||||||||||||||||    
T  39437171 tctgttaaagttaagaatctttagatatccctttaattgtacaacttcctagattgatt-ttataactcctagagtattcaacttcctaggctagtgctt 39437269  T
Q  310 actaaa-aagcattctatctatttattgtaaa 340  Q
    |||||| |||||||| || |||||||||||||    
T  39437270 actaaataagcattcaatgtatttattgtaaa 39437301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 211 - 340
Target Start/End: Complemental strand, 47442198 - 47442068
Alignment:
Q  211 ctgttaaaattaagaatctttagatattcctttaattgcattacttcctaagttgattgttattattcctagagtatacaacttcctaggctagtgctta 310  Q
    |||||||||||||||||||||||  |||||||| |||  || ||||||||  ||||| ||||||| |||||||||||||||||| |||| ||||||||||    
T  47442198 ctgttaaaattaagaatctttaggaattcctttcattctataacttcctagtttgatagttattactcctagagtatacaacttgctagtctagtgctta 47442099  T
Q  311 ctaa-aaagcattctatctatttattgtaaa 340  Q
    ||||  |||||||| ||  ||||||||||||    
T  47442098 ctaattaagcattcaatgcatttattgtaaa 47442068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 212 - 340
Target Start/End: Original strand, 37078990 - 37079118
Alignment:
Q  212 tgttaaaattaagaatctttagatattcctttaattgcattacttcctaagttgattgttattattcctagagtatacaacttcctaggctagtgcttac 311  Q
    ||||||| |||||||||||||||||| ||||||| || |  ||||||||  |||||||| || | ||||||||||| ||||||||||||||| |||||||    
T  37078990 tgttaaagttaagaatctttagatatccctttaactgtacaacttcctagattgattgt-ataactcctagagtattcaacttcctaggctactgcttac 37079088  T
Q  312 taaa-aagcattctatctatttattgtaaa 340  Q
    |||| |||||||| || |||||||||||||    
T  37079089 taaataagcattcaatgtatttattgtaaa 37079118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 212 - 340
Target Start/End: Original strand, 49529487 - 49529613
Alignment:
Q  212 tgttaaaattaagaatctttagatattcctttaattgcattacttcctaagttgattgttattattcctagagtatacaacttcctaggctagtgcttac 311  Q
    ||||||| ||||||||||||||||   |||||||||| |  ||||||||  |||||||| || | ||||||||||| |||||||||||||||||||||||    
T  49529487 tgttaaagttaagaatctttagatc--cctttaattgtacaacttcctagattgattgt-ataactcctagagtattcaacttcctaggctagtgcttac 49529583  T
Q  312 taaa-aagcattctatctatttattgtaaa 340  Q
    |||| |||||||| || ||||||| |||||    
T  49529584 taaataagcattcaatgtatttatggtaaa 49529613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 212 - 340
Target Start/End: Original strand, 37078261 - 37078389
Alignment:
Q  212 tgttaaaattaagaatctttagatattcctttaattgcattacttcctaagttgattgttattattcctagagtatacaacttcctaggctagtgcttac 311  Q
    ||||||| |||||||||||||||||| ||||||| || |  ||||||||  ||||||| ||| | ||||||||||| |||||| |||||||| || ||||    
T  37078261 tgttaaagttaagaatctttagatatccctttaactgtacaacttcctagattgattg-tataactcctagagtattcaactttctaggctactgtttac 37078359  T
Q  312 taaa-aagcattctatctatttattgtaaa 340  Q
    |||| |||||||| || |||||||||||||    
T  37078360 taaataagcattcaatgtatttattgtaaa 37078389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 212 - 312
Target Start/End: Complemental strand, 44898072 - 44897972
Alignment:
Q  212 tgttaaaattaagaatctttagatattcctttaattgcattacttcctaagttgattgttattattcctagagtatacaacttcctaggctagtgcttac 311  Q
    |||| |||||||||||||||| ||||||||||||||| |  |||||| |  ||||||||||||| ||| |||||||||  |||||||||||||| |||||    
T  44898072 tgttgaaattaagaatctttacatattcctttaattgtacaacttcccagattgattgttattactccaagagtatactccttcctaggctagttcttac 44897973  T
Q  312 t 312  Q
    |    
T  44897972 t 44897972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 263 - 312
Target Start/End: Complemental strand, 6848740 - 6848691
Alignment:
Q  263 ttgattgttattattcctagagtatacaacttcctaggctagtgcttact 312  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  6848740 ttgattgttattactcctagagtatacaacttcctaggctagtgcttact 6848691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 212 - 306
Target Start/End: Complemental strand, 28502004 - 28501913
Alignment:
Q  212 tgttaaaattaagaatctttagatattcctttaattgcattacttcctaagttgattgttattattcctagagtatacaacttcctaggctagtg 306  Q
    ||||||| ||||||||||||||||||||||||||||| |  ||||||||  |||||||| |||| |||||   ||| ||||||||||||||||||    
T  28502004 tgttaaagttaagaatctttagatattcctttaattgtacaacttcctagattgattgtaattactccta---tattcaacttcctaggctagtg 28501913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 214 - 340
Target Start/End: Complemental strand, 50848298 - 50848170
Alignment:
Q  214 ttaaaattaagaatctttagatattcctttaattgcattacttcctaagttgattgttattattccta-gagtatacaacttcctaggctagtgcttact 312  Q
    ||||| |||||||||||||||||||| |||||||    |||||||||  |||||||  |||| ||| | |||||| ||||||||||||||||||||||||    
T  50848298 ttaaagttaagaatctttagatattcgtttaattattctacttcctagattgattgcgattactcccaagagtattcaacttcctaggctagtgcttact 50848199  T
Q  313 aa-aaagcattctatctatttattgtaaa 340  Q
    ||  |||||||| || ||||| |||||||    
T  50848198 aattaagcattcaatgtattttttgtaaa 50848170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 211 - 290
Target Start/End: Original strand, 16184704 - 16184783
Alignment:
Q  211 ctgttaaaattaagaatctttagatattcctttaattgcattacttcctaagttgattgttattattcctagagtataca 290  Q
    ||||||||| ||||||||||||||||||| |||||||| |  |||||||    |||||||||||||||||||||||||||    
T  16184704 ctgttaaaagtaagaatctttagatattcttttaattgtacaacttcctcgactgattgttattattcctagagtataca 16184783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 212 - 335
Target Start/End: Original strand, 22383977 - 22384096
Alignment:
Q  212 tgttaaaattaagaatctttagatattcctttaattgcattacttcctaagttgattgttattattcctagagtatacaacttcctaggctagtgcttac 311  Q
    |||||||||||||||||||||||||||||||     | |  ||||| ||  ||||||||||||||||||| ||||||||| |||||| ||| |||||||     
T  22383977 tgttaaaattaagaatctttagatattcctt-----gtacaacttcttagattgattgttattattcctatagtatacaatttcctaagcttgtgcttat 22384071  T
Q  312 taa-aaagcattctatctatttatt 335  Q
    |||  |||||||| || ||||||||    
T  22384072 taattaagcattcaatgtatttatt 22384096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 245
Target Start/End: Complemental strand, 32476768 - 32476734
Alignment:
Q  211 ctgttaaaattaagaatctttagatattcctttaa 245  Q
    |||||||||||||||||||||||||||||||||||    
T  32476768 ctgttaaaattaagaatctttagatattcctttaa 32476734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 299
Target Start/End: Complemental strand, 34249673 - 34249593
Alignment:
Q  211 ctgttaaaattaagaatctttagatattcctttaattgcattacttcctaagttgattgttattattcctagagtatacaacttcctag 299  Q
    |||||||||||||||||| |||||||||||| ||||||   |||     || || |||||||||| |||||||||||||||||||||||    
T  34249673 ctgttaaaattaagaatccttagatattcctataattg---tac-----aacttaattgttattactcctagagtatacaacttcctag 34249593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 298
Target Start/End: Original strand, 50853897 - 50853983
Alignment:
Q  212 tgttaaaattaagaatctttagatattcctttaattgcattacttcctaagttgattgttattattcctagagtatacaacttccta 298  Q
    |||||||||||||| |||| ||||||||||||||||| |  || | |||  ||||||||||||| ||| | | ||||||||||||||    
T  50853897 tgttaaaattaagattcttaagatattcctttaattgtacaacattctagattgattgttattactcccacaatatacaacttccta 50853983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 248
Target Start/End: Original strand, 13188076 - 13188112
Alignment:
Q  212 tgttaaaattaagaatctttagatattcctttaattg 248  Q
    ||||||||||||| |||||||||||||||||||||||    
T  13188076 tgttaaaattaagtatctttagatattcctttaattg 13188112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 310
Target Start/End: Original strand, 34611880 - 34611963
Alignment:
Q  224 gaatctttagatattcctttaattgcattacttcctaagttgattgttattattcctagagtatacaacttcctaggctagtgctta 310  Q
    |||||| ||| ||||||||||| || |  |||||||   |||||||||| |||||  |||||||||||| ||||||| |||||||||    
T  34611880 gaatctgtagttattcctttaaatgtacaacttcct---ttgattgttaatattcacagagtatacaacatcctaggttagtgctta 34611963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 216 - 314
Target Start/End: Original strand, 26218770 - 26218868
Alignment:
Q  216 aaaattaagaatctttagatattcctttaattgcattacttcctaagttgattgttattattcctagagtatacaacttcctaggctagtgcttactaa 314  Q
    ||||||||||||||||||||||||||||||||| || ||||| ||  ||||||||||||||||||||| |||||||| ||||||| |||||||||||||    
T  26218770 aaaattaagaatctttagatattcctttaattgtataacttcatagattgattgttattattcctagaatatacaacatcctaggttagtgcttactaa 26218868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 212 - 340
Target Start/End: Complemental strand, 20270037 - 20269908
Alignment:
Q  212 tgttaaaattaagaatctttagatattcctttaattgcattacttcctaagttgattgttattattcctagagtatacaacttcctaggctagtgcttac 311  Q
    ||||||||||||||||||||||||||||||||||||| |  | ||||||  ||||||||||||| ||||| | |||||||||||||||| ||||||||||    
T  20270037 tgttaaaattaagaatctttagatattcctttaattgtacaatttcctagattgattgttattactcctacactatacaacttcctaggttagtgcttac 20269938  T
Q  312 taa-aaagcattctatctatttattgtaaa 340  Q
    |||  ||| |||| || |||||||||||||    
T  20269937 taattaagtattcaatgtatttattgtaaa 20269908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 212 - 308
Target Start/End: Complemental strand, 48596952 - 48596856
Alignment:
Q  212 tgttaaaattaagaatctttagatattcctttaattgcattacttcctaagttgattgttattattcctagagtatacaacttcctaggctagtgct 308  Q
    |||||||||||||||| |||||||||||||||||||  || ||||||||  ||||||||||||| |||||||||||| |||||||| || |||||||    
T  48596952 tgttaaaattaagaatttttagatattcctttaattttataacttcctagattgattgttattactcctagagtataaaacttccttggttagtgct 48596856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 225 - 310
Target Start/End: Original strand, 55242339 - 55242424
Alignment:
Q  225 aatctttagatattcctttaattgcattacttcctaagttgattgttattattcctagagtatacaacttcctaggctagtgctta 310  Q
    ||||| ||| ||||||||||| || |  ||||||||  |||||||||| ||| ||||||||||||||||||||||| |||||||||    
T  55242339 aatctgtagttattcctttaaatgtacaacttcctagattgattgttaatatccctagagtatacaacttcctaggttagtgctta 55242424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 214 - 295
Target Start/End: Complemental strand, 28767710 - 28767629
Alignment:
Q  214 ttaaaattaagaatctttagatattcctttaattgcattacttcctaagttgattgttattattcctagagtatacaacttc 295  Q
    |||||||||| |||||||| |||||| |||||||| |  ||||||||  |||||||||||||   |||||||||||||||||    
T  28767710 ttaaaattaaaaatctttaaatattcatttaattgtacaacttcctagattgattgttattacaactagagtatacaacttc 28767629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 310
Target Start/End: Complemental strand, 109711 - 109621
Alignment:
Q  220 ttaagaatctttagatattcctttaattgcattacttcctaagttgattgttattattcctagagtatacaacttcctaggctagtgctta 310  Q
    |||| |||||||||||||| ||||||||| |  |||| |||  ||||||||||||| | || | ||||||||||| ||| |||||||||||    
T  109711 ttaaaaatctttagatattactttaattgtacaactttctagattgattgttattacttctcgcgtatacaactttctaagctagtgctta 109621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 263 - 339
Target Start/End: Original strand, 40268368 - 40268445
Alignment:
Q  263 ttgattgttattattcctagagtatacaacttcctaggctagtgcttact-aaaaagcattctatctatttattgtaa 339  Q
    |||||||||| ||||||||||||||| |||||| |||| ||||||||| | |  || ||||| |||||||||||||||    
T  40268368 ttgattgttaatattcctagagtatataacttcataggttagtgcttattcattaaccattcaatctatttattgtaa 40268445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 225 - 306
Target Start/End: Complemental strand, 44399709 - 44399629
Alignment:
Q  225 aatctttagatattcctttaattgcattacttcctaagttgattgttattattcctagagtatacaacttcctaggctagtg 306  Q
    ||||| |||||||||||||||||  |  ||||||||  |||||||||||| || ||||||||||||||||||| || |||||    
T  44399709 aatctgtagatattcctttaattatacaacttcctagattgattgttatt-tttctagagtatacaacttcctgggttagtg 44399629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 340
Target Start/End: Complemental strand, 28767534 - 28767474
Alignment:
Q  281 agagtatacaacttcctaggctagtgcttact-aaaaagcattctatctatttattgtaaa 340  Q
    |||||||||||||||||||||||||||||||| |  |||||||| ||  ||||||||||||    
T  28767534 agagtatacaacttcctaggctagtgcttactcattaagcattcaatacatttattgtaaa 28767474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 3e-27; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 211 - 309
Target Start/End: Complemental strand, 27828502 - 27828404
Alignment:
Q  211 ctgttaaaattaagaatctttagatattcctttaattgcattacttcctaagttgattgttattattcctagagtatacaacttcctaggctagtgctt 309  Q
    |||||||||||| ||||||||||||||||| ||||||| |  ||||||||  ||||||||||||| ||||||| |||||||||||||||||||||||||    
T  27828502 ctgttaaaattatgaatctttagatattcccttaattgtacaacttcctagattgattgttattactcctagaatatacaacttcctaggctagtgctt 27828404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 215 - 312
Target Start/End: Original strand, 7518858 - 7518955
Alignment:
Q  215 taaaattaagaatctttagatattcctttaattgcattacttcctaagttgattgttattattcctagagtatacaacttcctaggctagtgcttact 312  Q
    |||||||||| |||||||||||||||||||| || |  ||||||||  |||| |||||||| ||||||||||||||||||||||||||||||||||||    
T  7518858 taaaattaagcatctttagatattcctttaactgtacaacttcctagattgactgttattactcctagagtatacaacttcctaggctagtgcttact 7518955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 212 - 340
Target Start/End: Complemental strand, 43432264 - 43432135
Alignment:
Q  212 tgttaaaattaagaatctttagatattcctttaattgcattacttcctaagttgattgttattattcctagagtatacaacttcctaggctagtgcttac 311  Q
    ||||||||||||||||||| | ||||||||||||||| |  ||||| ||  ||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  43432264 tgttaaaattaagaatcttcatatattcctttaattgtacaacttcgtagattgattgttattattcctaaagtatgcaacttcctaggctagtgcttac 43432165  T
Q  312 t-aaaaagcattctatctatttattgtaaa 340  Q
    | |  |||||||| ||  ||||||||||||    
T  43432164 tgattaagcattcaatgaatttattgtaaa 43432135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 212 - 340
Target Start/End: Original strand, 4446382 - 4446511
Alignment:
Q  212 tgttaaaattaagaatctttagatattcctttaattgcattacttcctaagttgattgttattattcctagagtatacaacttcctaggctagtgcttac 311  Q
    ||||||| |||||||| ||||||||| |||||||||| |  ||||||||  |||||||| || | ||||||||||| |||||||||||||||||||||||    
T  4446382 tgttaaagttaagaatatttagatatccctttaattgtacaacttcctagattgattgt-ataactcctagagtattcaacttcctaggctagtgcttac 4446480  T
Q  312 taaa-aag-cattctatctatttattgtaaa 340  Q
    |||| ||| ||||| || |||||||||||||    
T  4446481 taaataagccattcaatgtatttattgtaaa 4446511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 211 - 300
Target Start/End: Complemental strand, 23498465 - 23498376
Alignment:
Q  211 ctgttaaaattaagaatctttagatattcctttaattgcattacttcctaagttgattgttattattcctagagtatacaacttcctagg 300  Q
    ||||| ||||||||||||||||||| |||||||||||| | |||||||||  ||||||| ||||| |||| | |||||||||||| ||||    
T  23498465 ctgttgaaattaagaatctttagattttcctttaattgtactacttcctagattgattgctattactcctggggtatacaacttcttagg 23498376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 233 - 312
Target Start/End: Complemental strand, 27827672 - 27827593
Alignment:
Q  233 gatattcctttaattgcattacttcctaagttgattgttattattcctagagtatacaacttcctaggctagtgcttact 312  Q
    |||||||| ||||||| |  ||||||||  ||| ||||||| | ||||||||||||||||||||||||||||||||||||    
T  27827672 gatattcccttaattgtacaacttcctagattggttgttataactcctagagtatacaacttcctaggctagtgcttact 27827593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 277 - 340
Target Start/End: Original strand, 4445531 - 4445595
Alignment:
Q  277 tcctagagtatacaacttcctaggctagtgcttactaaa-aagcattctatctatttattgtaaa 340  Q
    ||||||||||| ||||||||||||||||||||||||||| |||||||  || |||||||||||||    
T  4445531 tcctagagtattcaacttcctaggctagtgcttactaaataagcatttaatgtatttattgtaaa 4445595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 253 - 312
Target Start/End: Complemental strand, 27827504 - 27827445
Alignment:
Q  253 acttcctaagttgattgttattattcctagagtatacaacttcctaggctagtgcttact 312  Q
    ||||||||  ||||||||| |||  |||||||||||||||||||||||||||||||||||    
T  27827504 acttcctagattgattgttcttacacctagagtatacaacttcctaggctagtgcttact 27827445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 337
Target Start/End: Complemental strand, 9479641 - 9479568
Alignment:
Q  266 attgttattattcctagagtatacaacttcctag-gctagtgcttactaaa-aagcattctatctatttattgt 337  Q
    |||||||||| || ||||||||||||||| ||||  |||||| |||||||| |||||||| || ||||||||||    
T  9479641 attgttattactcttagagtatacaactttctagacctagtgtttactaaataagcattcaatgtatttattgt 9479568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 214 - 340
Target Start/End: Complemental strand, 15869526 - 15869399
Alignment:
Q  214 ttaaaattaagaatctttagatattcctttaattgcattacttcctaagttgattgttattattcctagagtatacaacttcctaggctagtgcttact- 312  Q
    |||||||||||||||||||||||||||||| || | |  ||| ||||  ||||||||||||| ||||||||||| ||||||| ||||||||||||||||     
T  15869526 ttaaaattaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcctagagtatgcaacttcataggctagtgcttactc 15869427  T
Q  313 aaaaagcattctatctatttattgtaaa 340  Q
    |  |||||||| || |||||||||||||    
T  15869426 attaagcattcaatgtatttattgtaaa 15869399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University