View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10886_1 (Length: 471)
Name: NF10886_1
Description: NF10886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10886_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 415; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 8 - 445
Target Start/End: Complemental strand, 6315480 - 6315042
Alignment:
| Q |
8 |
tcagttatagccaaaaactatgagccattgtattaacaaccaatttgcagtcagtcacaattgtccccgtactatttgctcactccataaccctccataa |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6315480 |
tcagttatagccaaaaactatgagccattgtattaacaaccaatttgcagtcagtcacaattgtccccgtactatttgctcactccataaccctccataa |
6315381 |
T |
|
| Q |
108 |
agccatcacttcatcttcatttgtaaagggatcc-atccgcccaacaagtctccgttgctactaatccacctgttgccatatgacaagtacccctgttgt |
206 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6315380 |
agccgtcacttcatcttcatttgtaaagggatcccatctgcccaacaagtctccgttgctactaatccacctgttgccatatgacaagtacccctgttgt |
6315281 |
T |
|
| Q |
207 |
ggttttttccatctactatatgcctcgtgttaatctccaaattctaagtattttgctgctttttcttttgccatttcaaaacaacagggaactaaatagc |
306 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6315280 |
ggtcttttccatctactatatgcctcgtgttaatctccaaattctaagtattttgctgctttttcttttgccatttcaaaacaacagggaactaaatagc |
6315181 |
T |
|
| Q |
307 |
ttgttggattgttgccaggcatattccaaagctgcttacttcttctcttccatatattccacaacaccatagttaaaccattcataatcattgttgtgca |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6315180 |
ttgttggattgttgccaggcatattccaaagctgcttacttcttctcttccatatattccacaacaccatagttaaaccattcataatcattgttgtgca |
6315081 |
T |
|
| Q |
407 |
gttgttgatgacagtaaaaataaactctgcacatgatga |
445 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
6315080 |
gttgttgatgacagtaaaaataaattctgcacatgatga |
6315042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 383 - 445
Target Start/End: Complemental strand, 6318236 - 6318172
Alignment:
| Q |
383 |
accattcataatcattgttgtgcagttgttgatgacagtaaaaataaa--ctctgcacatgatga |
445 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||||||||| |||| |||| |||||||||| |
|
|
| T |
6318236 |
accattcataatccttgttgtgcagctgttgatgacagtaaaattaaattctctccacatgatga |
6318172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University