View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10886_2 (Length: 387)
Name: NF10886_2
Description: NF10886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10886_2 |
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Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 45 - 322
Target Start/End: Original strand, 48711542 - 48711819
Alignment:
| Q |
45 |
gttcagtacactaatagaacatgattacaccttacacgacaagggaaacgaaagaggaaatcaattttgcagtttcagtacaagaatgaagcagaactga |
144 |
Q |
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| T |
48711542 |
gttcagtacactaatagaacatgattacaccttacacgacaagagaaacgaaagaggaaatcaattttgcagtttcagtacaagaatgaagcagaactga |
48711641 |
T |
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| Q |
145 |
aacaagatttgcgatttacggtttcaacaacagaggaaaacgattttgcagtttcaacaacaattgggatacaattttgtcattttggggttgaagacga |
244 |
Q |
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| T |
48711642 |
aacaagatttgcgatttacggtttcaacaacagaggaaaacgattttgcagtttcaacaacaattgggatacaattttgtgatttttgggttgaagacga |
48711741 |
T |
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| Q |
245 |
accggaaaaggataatatctaatgttatggtgttatgagaggagctatggaggaagaagaagaactagaacacgttga |
322 |
Q |
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| T |
48711742 |
actggaaatggataatatctaatgttatggtgttatgagaggagctatggaggaagaagaagaactagaacacgttga |
48711819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 150 - 308
Target Start/End: Original strand, 48294620 - 48294778
Alignment:
| Q |
150 |
gatttgcgatttacggtttcaacaacagaggaaaacgattttgcagtttcaacaacaattgggatacaattttgtcattttggggttgaagacgaaccgg |
249 |
Q |
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| T |
48294620 |
gattcgcgatttacggcttcaacaacagaggaaaacgattttacagtttcaacaacaattgggacacgattttgtgattttgaggttgaagaagaactgg |
48294719 |
T |
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| Q |
250 |
aaaaggataatatctaatgttatggtgttatgagaggagctatggaggaagaagaagaa |
308 |
Q |
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| T |
48294720 |
aaaaggataataactaatgttatggtgctatgaggagagctatggaggaagaagaagaa |
48294778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 74; Significance: 7e-34; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 195 - 308
Target Start/End: Complemental strand, 4623621 - 4623508
Alignment:
| Q |
195 |
gtttcaacaacaattgggatacaattttgtcattttggggttgaagacgaaccggaaaaggataatatctaatgttatggtgttatgagaggagctatgg |
294 |
Q |
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| T |
4623621 |
gtttcaacaacaattgggacacgattttgtgattttgaggttgaagaagaactggaaaaggataataactaatgttatggtgctacgagaagagctatgg |
4623522 |
T |
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| Q |
295 |
aggaagaagaagaa |
308 |
Q |
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| T |
4623521 |
aggaagaagaagaa |
4623508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 115 - 176
Target Start/End: Complemental strand, 4623671 - 4623610
Alignment:
| Q |
115 |
agtttcagtacaagaatgaagcagaactgaaacaagatttgcgatttacggtttcaacaaca |
176 |
Q |
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| T |
4623671 |
agtttcagtacacgaatcaagcagaactggaacatgattcgcggtttacggtttcaacaaca |
4623610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 88 - 191
Target Start/End: Original strand, 29616780 - 29616883
Alignment:
| Q |
88 |
ggaaacgaaagaggaaatcaattttgcagtttcagtacaagaatgaagcagaactgaaacaagatttgcgatttacggtttcaacaacagaggaaaacga |
187 |
Q |
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|||||||||||||||||| ||||||| |||||||||| ||||||| |||||| |||| | | ||||||| ||||||||||| ||||||| ||| |
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| T |
29616780 |
ggaaacgaaagaggaaattgattttgcgatttcagtacactaatgaagaagaactagaacacaactcgcgatttcgggtttcaacaatagaggaatgcga |
29616879 |
T |
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| Q |
188 |
tttt |
191 |
Q |
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|||| |
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| T |
29616880 |
tttt |
29616883 |
T |
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