View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10886_4 (Length: 308)

Name: NF10886_4
Description: NF10886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10886_4
NF10886_4
[»] scaffold0004 (2 HSPs)
scaffold0004 (181-308)||(90855-90982)
scaffold0004 (14-77)||(90707-90770)
[»] chr4 (16 HSPs)
chr4 (39-107)||(27434682-27434750)
chr4 (50-107)||(4895044-4895101)
chr4 (28-104)||(1051192-1051268)
chr4 (39-107)||(24294539-24294607)
chr4 (39-107)||(24969572-24969640)
chr4 (45-107)||(4552857-4552919)
chr4 (30-107)||(20435162-20435239)
chr4 (30-107)||(42274514-42274591)
chr4 (39-107)||(1298984-1299052)
chr4 (39-107)||(23928598-23928666)
chr4 (45-107)||(530706-530768)
chr4 (45-107)||(55107596-55107658)
chr4 (39-107)||(21048736-21048804)
chr4 (39-107)||(24915825-24915893)
chr4 (39-107)||(32318751-32318819)
chr4 (39-107)||(35360748-35360816)
[»] chr2 (14 HSPs)
chr2 (39-107)||(39243014-39243082)
chr2 (39-107)||(7737137-7737205)
chr2 (39-107)||(34455957-34456025)
chr2 (39-107)||(9281378-9281446)
chr2 (39-107)||(24101863-24101931)
chr2 (39-107)||(27920644-27920712)
chr2 (39-107)||(43476018-43476086)
chr2 (39-107)||(45408697-45408765)
chr2 (53-107)||(12850587-12850641)
chr2 (39-107)||(1924011-1924079)
chr2 (39-103)||(2818742-2818806)
chr2 (39-107)||(3116948-3117016)
chr2 (39-107)||(20892957-20893025)
chr2 (39-107)||(23835949-23836017)
[»] chr3 (28 HSPs)
chr3 (50-107)||(157010-157067)
chr3 (39-107)||(50099506-50099574)
chr3 (45-107)||(404117-404179)
chr3 (39-107)||(44920677-44920745)
chr3 (40-107)||(43150552-43150619)
chr3 (45-107)||(10441295-10441357)
chr3 (30-107)||(36657455-36657532)
chr3 (39-107)||(10254641-10254709)
chr3 (39-107)||(25446322-25446390)
chr3 (39-107)||(26906526-26906594)
chr3 (39-107)||(36278787-36278855)
chr3 (39-107)||(45487871-45487939)
chr3 (39-107)||(46664248-46664316)
chr3 (50-106)||(46679334-46679390)
chr3 (45-107)||(12789678-12789740)
chr3 (50-107)||(44611423-44611480)
chr3 (50-107)||(45712945-45713002)
chr3 (39-107)||(3970522-3970590)
chr3 (39-107)||(4072304-4072372)
chr3 (39-107)||(8831813-8831881)
chr3 (39-107)||(12838149-12838217)
chr3 (39-107)||(13078194-13078262)
chr3 (39-107)||(21969188-21969256)
chr3 (39-107)||(21991624-21991692)
chr3 (39-107)||(22101237-22101305)
chr3 (39-107)||(32237425-32237493)
chr3 (39-107)||(43639112-43639180)
chr3 (39-107)||(55340324-55340392)
[»] chr7 (18 HSPs)
chr7 (39-107)||(40358187-40358255)
chr7 (45-107)||(9285751-9285813)
chr7 (45-107)||(9289818-9289880)
chr7 (39-107)||(20184269-20184337)
chr7 (27-107)||(31521544-31521624)
chr7 (39-107)||(37093840-37093908)
chr7 (53-107)||(38989116-38989170)
chr7 (30-107)||(30594765-30594842)
chr7 (30-107)||(38883293-38883370)
chr7 (39-107)||(24836092-24836160)
chr7 (39-107)||(34052351-34052419)
chr7 (39-107)||(35339309-35339377)
chr7 (45-107)||(31231651-31231713)
chr7 (45-107)||(33749716-33749778)
chr7 (50-107)||(10936512-10936569)
chr7 (39-107)||(30259097-30259165)
chr7 (39-107)||(39143743-39143811)
chr7 (27-107)||(39617860-39617940)
[»] chr6 (12 HSPs)
chr6 (39-107)||(4890511-4890579)
chr6 (39-107)||(885457-885525)
chr6 (50-105)||(17279601-17279656)
chr6 (30-107)||(11687165-11687242)
chr6 (39-107)||(7808681-7808749)
chr6 (39-107)||(13439768-13439836)
chr6 (39-107)||(15546704-15546772)
chr6 (39-107)||(21379972-21380040)
chr6 (45-107)||(14393636-14393698)
chr6 (54-107)||(3369057-3369110)
chr6 (39-107)||(13172605-13172672)
chr6 (45-105)||(31764362-31764422)
[»] chr5 (12 HSPs)
chr5 (39-103)||(13754322-13754386)
chr5 (30-107)||(15855915-15855992)
chr5 (30-107)||(16473027-16473104)
chr5 (30-107)||(35420634-35420711)
chr5 (39-107)||(12744898-12744966)
chr5 (39-107)||(20476503-20476571)
chr5 (45-107)||(21262015-21262077)
chr5 (30-107)||(12807983-12808060)
chr5 (50-107)||(37552350-37552407)
chr5 (50-107)||(37655194-37655251)
chr5 (39-107)||(1138631-1138699)
chr5 (53-101)||(1384373-1384421)
[»] scaffold0653 (1 HSPs)
scaffold0653 (45-107)||(3430-3492)
[»] scaffold0188 (1 HSPs)
scaffold0188 (39-107)||(7158-7226)
[»] chr8 (10 HSPs)
chr8 (39-107)||(17426659-17426727)
chr8 (27-107)||(23940823-23940903)
chr8 (39-107)||(29780990-29781058)
chr8 (45-107)||(8210395-8210457)
chr8 (30-107)||(38520090-38520167)
chr8 (39-107)||(4262007-4262075)
chr8 (39-107)||(11828627-11828695)
chr8 (39-107)||(38629546-38629614)
chr8 (39-107)||(40891085-40891153)
chr8 (39-107)||(40393795-40393862)
[»] chr1 (22 HSPs)
chr1 (45-107)||(3607766-3607828)
chr1 (30-107)||(50627203-50627280)
chr1 (39-107)||(957661-957729)
chr1 (39-107)||(2854563-2854631)
chr1 (39-107)||(6079456-6079524)
chr1 (39-107)||(9978082-9978150)
chr1 (39-107)||(23698533-23698601)
chr1 (39-107)||(40647190-40647258)
chr1 (39-107)||(48645045-48645113)
chr1 (39-107)||(48954245-48954313)
chr1 (39-107)||(50856352-50856420)
chr1 (30-107)||(5189541-5189618)
chr1 (50-107)||(19954953-19955010)
chr1 (39-107)||(1387850-1387918)
chr1 (39-107)||(2125101-2125169)
chr1 (51-107)||(4299435-4299491)
chr1 (39-107)||(15324699-15324767)
chr1 (39-107)||(26208497-26208565)
chr1 (39-107)||(27240955-27241023)
chr1 (30-106)||(36880584-36880660)
chr1 (39-107)||(47940601-47940669)
chr1 (39-107)||(51276726-51276794)
[»] scaffold0122 (1 HSPs)
scaffold0122 (39-107)||(45906-45974)
[»] scaffold0107 (1 HSPs)
scaffold0107 (39-107)||(51135-51203)


Alignment Details
Target: scaffold0004 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 181 - 308
Target Start/End: Original strand, 90855 - 90982
Alignment:
Q  181 ctttgtagagagttgttggtatccacccattcaagagtgaatgttactccacaatcccattatttgccaacactagtgacattttggacaaagaaagaaa 280  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  90855 ctttgtaaagagttgttggtatccacccattcaagagtgaatgttactccacaatcccattatttgccaacactagtgactttttggacaaagaaagaaa 90954  T
Q  281 tatgcaggctagttagagggcattgaac 308  Q
    ||||||||||||||||||||||||||||    
T  90955 tatgcaggctagttagagggcattgaac 90982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 77
Target Start/End: Original strand, 90707 - 90770
Alignment:
Q  14 aggttcttgacattttcttaaatgattttcttatgattcttaactaaatttatcataatttcct 77  Q
    ||||||||| |||||| |||||||||||| ||||| |||||||||||||||| ||| |||||||    
T  90707 aggttcttgtcatttttttaaatgatttttttatggttcttaactaaatttaccatgatttcct 90770  T

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Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 39 - 107
Target Start/End: Complemental strand, 27434750 - 27434682
Alignment:
Q  39 ttttcttatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    ||||| |||| |||||||||||||||| |||||||||||||| || |||||||| ||||||||||||||    
T  27434750 ttttcgtatggttcttaactaaatttaccataatttcctcaaattcataattttctcaaagtttgttat 27434682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 107
Target Start/End: Complemental strand, 4895101 - 4895044
Alignment:
Q  50 ttcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    |||||||||||||||| ||| |||||||||| || |||||||| ||||||||||||||    
T  4895101 ttcttaactaaatttaccatgatttcctcaaattcataattttctcaaagtttgttat 4895044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 28 - 104
Target Start/End: Original strand, 1051192 - 1051268
Alignment:
Q  28 ttcttaaatgattttcttatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgt 104  Q
    |||||| ||||||||| ||| |||||||| ||||||||| || ||||| |||| ||||||||||| | |||||||||    
T  1051192 ttcttacatgattttcgtataattcttaattaaatttattatgatttcttcaaatttataattttcttaaagtttgt 1051268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 39 - 107
Target Start/End: Complemental strand, 24294607 - 24294539
Alignment:
Q  39 ttttcttatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    ||||| |||| |||||||||||||| | |||||||||||||| ||  ||||||| ||||||||||||||    
T  24294607 ttttcgtatggttcttaactaaattcaccataatttcctcaaattcgtaattttctcaaagtttgttat 24294539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 39 - 107
Target Start/End: Original strand, 24969572 - 24969640
Alignment:
Q  39 ttttcttatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    ||||| |||| |||||||||||||| | ||| |||||||||| || |||||||| ||||||||||||||    
T  24969572 ttttcgtatggttcttaactaaattcaccatgatttcctcaaattcataattttctcaaagtttgttat 24969640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 107
Target Start/End: Complemental strand, 4552919 - 4552857
Alignment:
Q  45 tatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    |||| |||||||||||||| ||||| |||||||||| |  |||||||| ||||||||||||||    
T  4552919 tatggttcttaactaaattcatcatgatttcctcaaatccataattttctcaaagtttgttat 4552857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 107
Target Start/End: Original strand, 20435162 - 20435239
Alignment:
Q  30 cttaaatgattttcttatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    |||| ||| ||||| |||| |||||||||||||| ||||| |||||||||| |  |||||||| || |||||||||||    
T  20435162 cttagatgcttttcgtatggttcttaactaaattcatcatgatttcctcaaatccataattttctcgaagtttgttat 20435239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 107
Target Start/End: Original strand, 42274514 - 42274591
Alignment:
Q  30 cttaaatgattttcttatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    |||| ||| ||||| |||| |||||||||||||| | ||| |||||||||| |  |||||||| ||||||||||||||    
T  42274514 cttagatgcttttcgtatggttcttaactaaattcaccatgatttcctcaaatccataattttctcaaagtttgttat 42274591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 107
Target Start/End: Complemental strand, 1299052 - 1298984
Alignment:
Q  39 ttttcttatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    |||||||||| |||||||||||||| | ||| |||| ||||| |  |||||||| ||||||||||||||    
T  1299052 ttttcttatggttcttaactaaattcaccatgattttctcaaatccataattttctcaaagtttgttat 1298984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 107
Target Start/End: Original strand, 23928598 - 23928666
Alignment:
Q  39 ttttcttatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    ||||| ||||||||||||||||||| | ||| |||||||||| |  |||||||| ||||| ||||||||    
T  23928598 ttttcgtatgattcttaactaaattcaccatgatttcctcaaatccataattttctcaaaatttgttat 23928666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 107
Target Start/End: Original strand, 530706 - 530768
Alignment:
Q  45 tatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    |||| |||||||||||||| | ||| |||||||||| |  |||||||| ||||||||||||||    
T  530706 tatggttcttaactaaattcaccatcatttcctcaaatccataattttctcaaagtttgttat 530768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 107
Target Start/End: Complemental strand, 55107658 - 55107596
Alignment:
Q  45 tatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    |||| ||||| |||||||||| ||| |||||||||| |  |||||||| ||||||||||||||    
T  55107658 tatggttctttactaaatttaccatgatttcctcaaatgcataattttctcaaagtttgttat 55107596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 107
Target Start/End: Original strand, 21048736 - 21048804
Alignment:
Q  39 ttttcttatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    ||||| |||| |||||||||||||| | ||| |||||||||| |  |||||||| || |||||||||||    
T  21048736 ttttcgtatggttcttaactaaattcaccatgatttcctcaaatccataattttctcgaagtttgttat 21048804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 107
Target Start/End: Original strand, 24915825 - 24915893
Alignment:
Q  39 ttttcttatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    ||||| |||| |||||||||||||| | ||| |||| ||||| |  |||||||| ||||||||||||||    
T  24915825 ttttcgtatggttcttaactaaattcaccatgattttctcaaatccataattttctcaaagtttgttat 24915893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 107
Target Start/End: Original strand, 32318751 - 32318819
Alignment:
Q  39 ttttcttatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    ||||| |||| |||||||||||||| | ||| |||||||||  |  |||||||| ||||||||||||||    
T  32318751 ttttcgtatggttcttaactaaattcaccatgatttcctcagatccataattttctcaaagtttgttat 32318819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 107
Target Start/End: Complemental strand, 35360816 - 35360748
Alignment:
Q  39 ttttcttatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    ||||| |||| |||||||||||||| | ||| ||||||| || |  |||||||| ||||||||||||||    
T  35360816 ttttcgtatggttcttaactaaattcaccatgatttccttaaatccataattttctcaaagtttgttat 35360748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 39 - 107
Target Start/End: Original strand, 39243014 - 39243082
Alignment:
Q  39 ttttcttatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    ||||| ||||||||||||||||||||||| | ||||| |||| ||||| ||||||||||||||||||||    
T  39243014 ttttcgtatgattcttaactaaatttatcgtgatttcatcaaatttatgattttatcaaagtttgttat 39243082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 39 - 107
Target Start/End: Complemental strand, 7737205 - 7737137
Alignment:
Q  39 ttttcttatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    ||||| ||||||||||||||||||||| ||| ||||||||||    |||||||| ||||||||||||||    
T  7737205 ttttcgtatgattcttaactaaatttaccatgatttcctcaaagccataattttctcaaagtttgttat 7737137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 39 - 107
Target Start/End: Complemental strand, 34456025 - 34455957
Alignment:
Q  39 ttttcttatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    ||||| |||| ||| ||| |||||| |||||||||||||||| | ||||||||| ||||||||||||||    
T  34456025 ttttcgtatggttcctaattaaattcatcataatttcctcaaatctataattttctcaaagtttgttat 34455957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 107
Target Start/End: Original strand, 9281378 - 9281446
Alignment:
Q  39 ttttcttatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    ||||| |||| |||||||||||||| |  || |||||||||| || |||||||| ||||||||||||||    
T  9281378 ttttcatatggttcttaactaaattcactatgatttcctcaaattcataattttctcaaagtttgttat 9281446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 107
Target Start/End: Original strand, 24101863 - 24101931
Alignment:
Q  39 ttttcttatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    ||||| |||| ||||||||||||| || ||| |||||||||| |  |||||||| ||||||||||||||    
T  24101863 ttttcgtatggttcttaactaaatataccatgatttcctcaaatccataattttctcaaagtttgttat 24101931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 107
Target Start/End: Complemental strand, 27920712 - 27920644
Alignment:
Q  39 ttttcttatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    ||||| |||| |||||||||||||| | ||| |||||||||| |  |||||||| ||||||||||||||    
T  27920712 ttttcgtatggttcttaactaaattcaccatgatttcctcaaatccataattttttcaaagtttgttat 27920644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 107
Target Start/End: Complemental strand, 43476086 - 43476018
Alignment:
Q  39 ttttcttatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    ||||| |||| |||||||||||||| | ||| |||||||||| || |||||||| ||||||||| ||||    
T  43476086 ttttcgtatggttcttaactaaattcaccatgatttcctcaaattcataattttctcaaagtttattat 43476018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 107
Target Start/End: Complemental strand, 45408765 - 45408697
Alignment:
Q  39 ttttcttatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    ||||| |||| ||||||| |||||||| ||| |||||||||| |  |||||||| ||||||||||||||    
T  45408765 ttttcgtatggttcttaattaaatttaccatgatttcctcaaatccataattttctcaaagtttgttat 45408697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 107
Target Start/End: Original strand, 12850587 - 12850641
Alignment:
Q  53 ttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    ||||||||||||| ||| |||||||||| |  |||||||| ||||||||||||||    
T  12850587 ttaactaaatttaccatgatttcctcaaatccataattttctcaaagtttgttat 12850641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 107
Target Start/End: Original strand, 1924011 - 1924079
Alignment:
Q  39 ttttcttatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    ||||| |||| |||||||||||||| | ||| |||||||| | |  |||||||| ||||||||||||||    
T  1924011 ttttcgtatggttcttaactaaattcaccatgatttcctcgaatccataattttctcaaagtttgttat 1924079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 103
Target Start/End: Complemental strand, 2818806 - 2818742
Alignment:
Q  39 ttttcttatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttg 103  Q
    ||||| |||| |||||||||||||| | ||| |||||||||| |  |||||||| ||||||||||    
T  2818806 ttttcgtatggttcttaactaaattcaccatgatttcctcaaatccataattttctcaaagtttg 2818742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 107
Target Start/End: Complemental strand, 3117016 - 3116948
Alignment:
Q  39 ttttcttatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    ||||| |||| |||||||||||||| || || |||| ||||| |  |||||||| ||||||||||||||    
T  3117016 ttttcgtatggttcttaactaaattcattatgattttctcaaatccataattttctcaaagtttgttat 3116948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 107
Target Start/End: Complemental strand, 20893025 - 20892957
Alignment:
Q  39 ttttcttatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    ||||| |||||||||||||||||  ||  |||||||| |||| |  |||||||| ||||||||||||||    
T  20893025 ttttcgtatgattcttaactaaaaatacaataatttcatcaaatccataattttctcaaagtttgttat 20892957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 107
Target Start/End: Complemental strand, 23836017 - 23835949
Alignment:
Q  39 ttttcttatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    ||||| |||| || ||||| ||||||| ||| |||||||||| |  |||||||| ||||||||||||||    
T  23836017 ttttcgtatggtttttaacaaaatttaccatgatttcctcaaatccataattttctcaaagtttgttat 23835949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 50 - 107
Target Start/End: Original strand, 157010 - 157067
Alignment:
Q  50 ttcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    ||||||||||||||||||||||||||||||| |  |||||||| ||||||||||||||    
T  157010 ttcttaactaaatttatcataatttcctcaaatccataattttctcaaagtttgttat 157067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 39 - 107
Target Start/End: Complemental strand, 50099574 - 50099506
Alignment:
Q  39 ttttcttatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    ||||| |||| |||||||||||||| | |||||||||||||| || |||||||| ||||||||||||||    
T  50099574 ttttcgtatggttcttaactaaattcaccataatttcctcaaattcataattttctcaaagtttgttat 50099506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 45 - 107
Target Start/End: Complemental strand, 404179 - 404117
Alignment:
Q  45 tatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    |||| |||||||||||||| | ||| |||||||||||| ||||||||| ||||||||||||||    
T  404179 tatggttcttaactaaattcaccatgatttcctcaagtctataattttctcaaagtttgttat 404117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 39 - 107
Target Start/End: Original strand, 44920677 - 44920745
Alignment:
Q  39 ttttcttatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    |||||||||| ||||||||||||||||  || |||| ||||| ||||||||||| ||||||||| ||||    
T  44920677 ttttcttatggttcttaactaaatttacaatgattttctcaaatttataattttctcaaagtttattat 44920745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 40 - 107
Target Start/End: Complemental strand, 43150619 - 43150552
Alignment:
Q  40 tttcttatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    |||| ||||||||||||||||||| |  || |||||||||| || |||||||| ||||||||||||||    
T  43150619 tttcgtatgattcttaactaaattcactatgatttcctcaaattcataattttctcaaagtttgttat 43150552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 107
Target Start/End: Original strand, 10441295 - 10441357
Alignment:
Q  45 tatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    |||||||||||||||||  |||||| |||||||||| |  |||||||| ||||||||||||||    
T  10441295 tatgattcttaactaaaaatatcatgatttcctcaaatccataattttctcaaagtttgttat 10441357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 107
Target Start/End: Original strand, 36657455 - 36657532
Alignment:
Q  30 cttaaatgattttcttatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    |||| ||| ||||| |||| ||||||||||||  |||||| |||||||||| |  |||||||| ||||||||||||||    
T  36657455 cttagatgcttttcgtatggttcttaactaaaaatatcatgatttcctcaaatccataattttctcaaagtttgttat 36657532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 107
Target Start/End: Complemental strand, 10254709 - 10254641
Alignment:
Q  39 ttttcttatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    ||||| |||| |||||||||||||| ||||| |||| ||||| |  |||||||| ||||||||||||||    
T  10254709 ttttcgtatggttcttaactaaattcatcatgattttctcaaatccataattttttcaaagtttgttat 10254641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 107
Target Start/End: Complemental strand, 25446390 - 25446322
Alignment:
Q  39 ttttcttatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    ||||| |||| |||||||||||||| | ||| |||||||||| |  |||||||| ||||||||||||||    
T  25446390 ttttcgtatggttcttaactaaattcaccatgatttcctcaaatccataattttctcaaagtttgttat 25446322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 107
Target Start/End: Complemental strand, 26906594 - 26906526
Alignment:
Q  39 ttttcttatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    ||||| |||| |||||||||||||| |  || |||||||||| || |||||||| ||||||||||||||    
T  26906594 ttttcgtatggttcttaactaaattcactatgatttcctcaaattcataattttctcaaagtttgttat 26906526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 107
Target Start/End: Original strand, 36278787 - 36278855
Alignment:
Q  39 ttttcttatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    ||||| |||| |||||||||||||| |  || |||||||||| || |||||||| ||||||||||||||    
T  36278787 ttttcgtatggttcttaactaaattcactatgatttcctcaaattcataattttctcaaagtttgttat 36278855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 107
Target Start/End: Complemental strand, 45487939 - 45487871
Alignment:
Q  39 ttttcttatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    ||||| |||| |||||||||||||| | ||| |||||||||| || |||||||| |||| |||||||||    
T  45487939 ttttcgtatggttcttaactaaattcaccatgatttcctcaaattcataattttctcaatgtttgttat 45487871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 107
Target Start/End: Complemental strand, 46664316 - 46664248
Alignment:
Q  39 ttttcttatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    ||||| ||||||| ||||  |||  ||||||||||||||||| || |||||||| ||||||||||||||    
T  46664316 ttttcgtatgatttttaataaaaaatatcataatttcctcaaattcataattttctcaaagtttgttat 46664248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 106
Target Start/End: Complemental strand, 46679390 - 46679334
Alignment:
Q  50 ttcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgtta 106  Q
    |||||||||||||| | |||||||||||||| |  |||||||| |||||||||||||    
T  46679390 ttcttaactaaattcaccataatttcctcaaatccataattttctcaaagtttgtta 46679334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 107
Target Start/End: Complemental strand, 12789740 - 12789678
Alignment:
Q  45 tatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    |||| ||||||| |||||| | ||| |||||||||| || |||||||| ||||||||||||||    
T  12789740 tatggttcttaattaaattcaccatgatttcctcaaattcataattttttcaaagtttgttat 12789678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 107
Target Start/End: Original strand, 44611423 - 44611480
Alignment:
Q  50 ttcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    |||||||||||||| | ||| ||||| |||| || |||||||| ||||||||||||||    
T  44611423 ttcttaactaaattcaccatgatttcttcaaattcataattttctcaaagtttgttat 44611480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 107
Target Start/End: Original strand, 45712945 - 45713002
Alignment:
Q  50 ttcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    |||||||||||||| | ||| ||||||||||    |||||||||||||||||||||||    
T  45712945 ttcttaactaaattcaccatgatttcctcaaagccataattttatcaaagtttgttat 45713002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 107
Target Start/End: Original strand, 3970522 - 3970590
Alignment:
Q  39 ttttcttatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    ||||| |||| |||||||||||||| | ||| ||||||| || |  |||||||| ||||||||||||||    
T  3970522 ttttcgtatggttcttaactaaattcaccatgatttccttaaatccataattttctcaaagtttgttat 3970590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 107
Target Start/End: Original strand, 4072304 - 4072372
Alignment:
Q  39 ttttcttatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    ||||| |||| |||||||||||||| | ||| |||||||| | |  |||||||| ||||||||||||||    
T  4072304 ttttcgtatggttcttaactaaattcaccatgatttcctcgaatccataattttctcaaagtttgttat 4072372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 107
Target Start/End: Complemental strand, 8831881 - 8831813
Alignment:
Q  39 ttttcttatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    ||||| |||| |||||||||||||| | ||| ||||| |||| |  |||||||| ||||||||||||||    
T  8831881 ttttcgtatggttcttaactaaattcaccatgatttcttcaaatccataattttctcaaagtttgttat 8831813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 107
Target Start/End: Complemental strand, 12838217 - 12838149
Alignment:
Q  39 ttttcttatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    ||||| |||| || ||||||||||| | ||| |||||||||| |  |||||||| ||||||||||||||    
T  12838217 ttttcgtatggtttttaactaaattcaccatgatttcctcaaatccataattttctcaaagtttgttat 12838149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 107
Target Start/End: Original strand, 13078194 - 13078262
Alignment:
Q  39 ttttcttatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    ||||| |||| |||||||||||||| | ||| ||||||| || |  |||||||| ||||||||||||||    
T  13078194 ttttcgtatggttcttaactaaattcaccatgatttccttaaatccataattttctcaaagtttgttat 13078262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 107
Target Start/End: Original strand, 21969188 - 21969256
Alignment:
Q  39 ttttcttatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    ||||| |||| |||||||||||||| | ||| ||||||| || |  |||||||| ||||||||||||||    
T  21969188 ttttcgtatggttcttaactaaattcaccatgatttccttaaatccataattttctcaaagtttgttat 21969256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 107
Target Start/End: Original strand, 21991624 - 21991692
Alignment:
Q  39 ttttcttatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    ||||| |||| |||||||||||||| | ||| ||||||| || |  |||||||| ||||||||||||||    
T  21991624 ttttcgtatggttcttaactaaattcaccatgatttccttaaatccataattttctcaaagtttgttat 21991692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 107
Target Start/End: Complemental strand, 22101305 - 22101237
Alignment:
Q  39 ttttcttatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    ||||| |||| |||||||||||||| |  || |||||||||| |  |||||||| ||||||||||||||    
T  22101305 ttttcgtatggttcttaactaaattcactatgatttcctcaaatccataattttctcaaagtttgttat 22101237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 107
Target Start/End: Original strand, 32237425 - 32237493
Alignment:
Q  39 ttttcttatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    ||||| |||| |||||||||||||||| ||| |||| ||||  |  |||||||| ||||||||||||||    
T  32237425 ttttcgtatggttcttaactaaatttaccatgattttctcagatccataattttctcaaagtttgttat 32237493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 107
Target Start/End: Original strand, 43639112 - 43639180
Alignment:
Q  39 ttttcttatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    ||||| ||||||||||||| ||||| | ||| ||||| |||| |  |||||||| ||||||||||||||    
T  43639112 ttttcgtatgattcttaaccaaattcaccatgatttcttcaaatccataattttctcaaagtttgttat 43639180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 107
Target Start/End: Original strand, 55340324 - 55340392
Alignment:
Q  39 ttttcttatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    ||||| ||||||||||||||| ||| | ||| |||| ||||| |  |||||||| ||||||||||||||    
T  55340324 ttttcgtatgattcttaactatattcaccatgattttctcaaatccataattttctcaaagtttgttat 55340392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 39 - 107
Target Start/End: Complemental strand, 40358255 - 40358187
Alignment:
Q  39 ttttcttatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    ||||| ||||||||||||||||||| | ||| |||||||||| || |||||||| ||||||||||||||    
T  40358255 ttttcctatgattcttaactaaattcaccatgatttcctcaaattcataattttctcaaagtttgttat 40358187  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 45 - 107
Target Start/End: Original strand, 9285751 - 9285813
Alignment:
Q  45 tatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    |||| ||||||| |||||| | ||| |||||||||| ||||||||||||||||||||||||||    
T  9285751 tatggttcttaattaaattcaccatgatttcctcaaatttataattttatcaaagtttgttat 9285813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 45 - 107
Target Start/End: Original strand, 9289818 - 9289880
Alignment:
Q  45 tatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    |||| ||||||| |||||| | ||| |||||||||| ||||||||||||||||||||||||||    
T  9289818 tatggttcttaattaaattcaccatgatttcctcaaatttataattttatcaaagtttgttat 9289880  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 39 - 107
Target Start/End: Original strand, 20184269 - 20184337
Alignment:
Q  39 ttttcttatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    ||||| ||||||||||||||||||| | ||| |||||||||| |  |||||||| ||||||||||||||    
T  20184269 ttttcgtatgattcttaactaaattcaccatgatttcctcaaatccataattttctcaaagtttgttat 20184337  T

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Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 27 - 107
Target Start/End: Original strand, 31521544 - 31521624
Alignment:
Q  27 tttcttaaatgattttcttatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    ||||||| ||| ||||| |||| |||||||||||||||| ||| |||| ||||| || |||||||| ||||||||| ||||    
T  31521544 tttcttagatgcttttcgtatggttcttaactaaatttaccatgattttctcaaattcataattttttcaaagtttattat 31521624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 39 - 107
Target Start/End: Complemental strand, 37093908 - 37093840
Alignment:
Q  39 ttttcttatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    ||||| |||| || ||||||||||| | ||| |||||||||| ||||||||||| ||||||||||||||    
T  37093908 ttttcgtatggtttttaactaaattcaccatgatttcctcaaatttataattttctcaaagtttgttat 37093840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 107
Target Start/End: Original strand, 38989116 - 38989170
Alignment:
Q  53 ttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    |||||||||||||||||||||| || || | ||||||||| ||||||||||||||    
T  38989116 ttaactaaatttatcataattttcttaaatctataattttctcaaagtttgttat 38989170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 107
Target Start/End: Complemental strand, 30594842 - 30594765
Alignment:
Q  30 cttaaatgattttcttatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    |||| ||| ||||| |||| |||||||||||||| | ||| |||||||||| |  |||||||| ||||||||||||||    
T  30594842 cttagatgcttttcgtatggttcttaactaaattcaccatgatttcctcaaatccataattttctcaaagtttgttat 30594765  T

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Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 107
Target Start/End: Complemental strand, 38883370 - 38883293
Alignment:
Q  30 cttaaatgattttcttatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    |||| ||| ||||| |||| ||||||||||||  |||||| |||||||||| |  |||||||| ||||||||||||||    
T  38883370 cttagatgcttttcgtatggttcttaactaaaaatatcatgatttcctcaaatccataattttctcaaagtttgttat 38883293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 107
Target Start/End: Complemental strand, 24836160 - 24836092
Alignment:
Q  39 ttttcttatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    ||||| |||| |||||||||||||| | ||| |||||||||| |  |||||||| ||||||||||||||    
T  24836160 ttttcgtatggttcttaactaaattcaccatgatttcctcaaatccataattttctcaaagtttgttat 24836092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 107
Target Start/End: Complemental strand, 34052419 - 34052351
Alignment:
Q  39 ttttcttatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    ||||| |||| |||||| ||||||| | ||| |||||||||| || |||||||| ||||||||||||||    
T  34052419 ttttcgtatggttcttagctaaattcaccatgatttcctcaaattcataattttctcaaagtttgttat 34052351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 107
Target Start/End: Original strand, 35339309 - 35339377
Alignment:
Q  39 ttttcttatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    ||||| |||| |||||||||||||| ||||| ||||| |||| |  |||||||| ||||||||||||||    
T  35339309 ttttcgtatggttcttaactaaattcatcatgatttcttcaaatccataattttctcaaagtttgttat 35339377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 107
Target Start/End: Original strand, 31231651 - 31231713
Alignment:
Q  45 tatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    |||| |||||||||||||| | ||| |||||||||| |  |||||||| ||||||||||||||    
T  31231651 tatggttcttaactaaattcaccatgatttcctcaaatccataattttctcaaagtttgttat 31231713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 107
Target Start/End: Complemental strand, 33749778 - 33749716
Alignment:
Q  45 tatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    |||| |||||||||||||| ||||| ||||||| || || |||||||| ||||||||| ||||    
T  33749778 tatggttcttaactaaattcatcatgatttccttaaattcataattttctcaaagtttattat 33749716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 107
Target Start/End: Original strand, 10936512 - 10936569
Alignment:
Q  50 ttcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    |||||||||||||| | ||| | |||||||| | ||||||||| ||||||||||||||    
T  10936512 ttcttaactaaattcaccatgacttcctcaaatctataattttctcaaagtttgttat 10936569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 107
Target Start/End: Original strand, 30259097 - 30259165
Alignment:
Q  39 ttttcttatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    ||||| |||| |||||||||||||| | ||| |||| ||||| |  |||||||| ||||||||||||||    
T  30259097 ttttcctatggttcttaactaaattcaccatgattttctcaaatccataattttctcaaagtttgttat 30259165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 107
Target Start/End: Original strand, 39143743 - 39143811
Alignment:
Q  39 ttttcttatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    ||||| |||| ||||| |||||||| | |||||||||||||| |  ||||| || ||||||||||||||    
T  39143743 ttttcgtatggttcttgactaaattcaccataatttcctcaaatccataatattctcaaagtttgttat 39143811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 107
Target Start/End: Original strand, 39617860 - 39617940
Alignment:
Q  27 tttcttaaatgattttcttatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    ||||||| ||| | ||| |||| |||||||||||||| | ||| |||||||| | |  |||||||| ||||||||||||||    
T  39617860 tttcttagatgttcttcgtatggttcttaactaaattcaccatgatttcctccaatccataattttctcaaagtttgttat 39617940  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 39 - 107
Target Start/End: Original strand, 4890511 - 4890579
Alignment:
Q  39 ttttcttatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    ||||| |||| |||||||||||||||| ||| |||||||||| || |||||||| ||||||||||||||    
T  4890511 ttttcgtatggttcttaactaaatttaccatgatttcctcaaattcataattttctcaaagtttgttat 4890579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 39 - 107
Target Start/End: Complemental strand, 885525 - 885457
Alignment:
Q  39 ttttcttatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    ||||| ||||||||||||||||||| ||||| |||| ||||| |  |||||||| ||||||||||||||    
T  885525 ttttcctatgattcttaactaaattcatcatgattttctcaaatccataattttctcaaagtttgttat 885457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 50 - 105
Target Start/End: Complemental strand, 17279656 - 17279601
Alignment:
Q  50 ttcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgtt 105  Q
    |||||||||||||| ||||| ||||| |||| || |||||||||||||||||||||    
T  17279656 ttcttaactaaattcatcatgatttcttcaaattcataattttatcaaagtttgtt 17279601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 107
Target Start/End: Original strand, 11687165 - 11687242
Alignment:
Q  30 cttaaatgattttcttatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    |||| ||| ||||| |||| ||||||||||||  |||||| |||||||||| |  |||||||| ||||||||||||||    
T  11687165 cttagatgcttttcgtatggttcttaactaaaaatatcatgatttcctcaaatccataattttctcaaagtttgttat 11687242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 107
Target Start/End: Complemental strand, 7808749 - 7808681
Alignment:
Q  39 ttttcttatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    ||||| |||| ||||||||||||  || ||| |||||||||| | ||||||||| ||||||||||||||    
T  7808749 ttttcgtatggttcttaactaaaaataccatgatttcctcaaatctataattttctcaaagtttgttat 7808681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 107
Target Start/End: Complemental strand, 13439836 - 13439768
Alignment:
Q  39 ttttcttatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    ||||| |||| |||||||||||||| | ||| |||||||||| |  |||||||| ||||||||||||||    
T  13439836 ttttcgtatggttcttaactaaattcaccatgatttcctcaaatccataattttctcaaagtttgttat 13439768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 107
Target Start/End: Complemental strand, 15546772 - 15546704
Alignment:
Q  39 ttttcttatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    ||||| |||| ||||||| |||||||| ||| |||||||||| |  |||||||| ||||||||||||||    
T  15546772 ttttcgtatggttcttaattaaatttaccatgatttcctcaaatccataattttctcaaagtttgttat 15546704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 107
Target Start/End: Original strand, 21379972 - 21380040
Alignment:
Q  39 ttttcttatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    ||||| |||| |||||||||||||| | ||| |||||||||| || |||||||| |||| |||||||||    
T  21379972 ttttcgtatggttcttaactaaattcaccatgatttcctcaaattcataattttctcaatgtttgttat 21380040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 107
Target Start/End: Complemental strand, 14393698 - 14393636
Alignment:
Q  45 tatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    |||| |||||||||||||| | ||| |||||||||| |  |||||||| ||||||||||||||    
T  14393698 tatggttcttaactaaattcaccatgatttcctcaaatccataattttctcaaagtttgttat 14393636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 3369110 - 3369057
Alignment:
Q  54 taactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    |||||||||| | ||| |||||||||| || |||||||| ||||||||||||||    
T  3369110 taactaaattcaccatgatttcctcaaattcataattttctcaaagtttgttat 3369057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 107
Target Start/End: Original strand, 13172605 - 13172672
Alignment:
Q  39 ttttcttatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    ||||| |||| |||||||||||||| || || |||||||||| |  |||||||| ||||||||||||||    
T  13172605 ttttcgtatggttcttaactaaattcat-atcatttcctcaaatccataattttctcaaagtttgttat 13172672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 105
Target Start/End: Original strand, 31764362 - 31764422
Alignment:
Q  45 tatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgtt 105  Q
    |||| |||||||||||||| | ||| |||| ||||| || |||||||| ||||||||||||    
T  31764362 tatggttcttaactaaattcaccattattttctcaaattcataattttctcaaagtttgtt 31764422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 39 - 103
Target Start/End: Original strand, 13754322 - 13754386
Alignment:
Q  39 ttttcttatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttg 103  Q
    ||||| ||||||||||||||||||| | |||||||||||||| || |||||||| ||||||||||    
T  13754322 ttttcgtatgattcttaactaaattcaccataatttcctcaaattcataattttctcaaagtttg 13754386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 107
Target Start/End: Complemental strand, 15855992 - 15855915
Alignment:
Q  30 cttaaatgattttcttatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    |||| ||| ||||| |||| ||||||||||||  |||||| |||||||||| |  |||||||| ||||||||||||||    
T  15855992 cttagatgcttttcgtatggttcttaactaaaaatatcatgatttcctcaaatccataattttctcaaagtttgttat 15855915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 107
Target Start/End: Complemental strand, 16473104 - 16473027
Alignment:
Q  30 cttaaatgattttcttatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    |||| ||| ||||| |||| ||||||||||||  |||||| |||||||||| |  |||||||| ||||||||||||||    
T  16473104 cttagatgcttttcgtatggttcttaactaaaaatatcatgatttcctcaaatccataattttctcaaagtttgttat 16473027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 107
Target Start/End: Original strand, 35420634 - 35420711
Alignment:
Q  30 cttaaatgattttcttatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    |||| ||| ||||| |||| ||||||||||||  |||||| |||||||||| |  |||||||| ||||||||||||||    
T  35420634 cttagatgcttttcgtatggttcttaactaaaaatatcatgatttcctcaaatccataattttctcaaagtttgttat 35420711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 107
Target Start/End: Complemental strand, 12744966 - 12744898
Alignment:
Q  39 ttttcttatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    ||||| ||||||| || |||||||| | ||| |||||||||| || |||||||| ||||||||||||||    
T  12744966 ttttcgtatgatttttgactaaattcaccatgatttcctcaaattcataattttctcaaagtttgttat 12744898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 107
Target Start/End: Complemental strand, 20476571 - 20476503
Alignment:
Q  39 ttttcttatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    ||||| |||| |||||||||||||| ||||| |||||||||| |  |||||||| ||||| ||||||||    
T  20476571 ttttcgtatggttcttaactaaattcatcatgatttcctcaaatccataattttctcaaaatttgttat 20476503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 107
Target Start/End: Complemental strand, 21262077 - 21262015
Alignment:
Q  45 tatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    |||| |||||||||||||| ||||| |||||||||| |  | |||||| ||||||||||||||    
T  21262077 tatggttcttaactaaattcatcatgatttcctcaaatccacaattttctcaaagtttgttat 21262015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 107
Target Start/End: Complemental strand, 12808060 - 12807983
Alignment:
Q  30 cttaaatgattttcttatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    ||||| || ||||| |||||||||| |||||||| | ||| ||||||| || |  |||||||| ||||||||||||||    
T  12808060 cttaagtgtttttcgtatgattcttgactaaattcaccatgatttccttaaatccataattttttcaaagtttgttat 12807983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 107
Target Start/End: Original strand, 37552350 - 37552407
Alignment:
Q  50 ttcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    |||||||||||||| | ||| | |||||||| || |||||||| ||||||||||||||    
T  37552350 ttcttaactaaattcaccatgacttcctcaaattcataattttctcaaagtttgttat 37552407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 107
Target Start/End: Original strand, 37655194 - 37655251
Alignment:
Q  50 ttcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    |||||||||||||| | ||| | |||||||| || |||||||| ||||||||||||||    
T  37655194 ttcttaactaaattcaccatgacttcctcaaattcataattttctcaaagtttgttat 37655251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 107
Target Start/End: Complemental strand, 1138699 - 1138631
Alignment:
Q  39 ttttcttatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    ||||| |||| |||||||||||||| || || |||| ||||| |  |||||||| ||||||||||||||    
T  1138699 ttttcgtatggttcttaactaaattcattatgattttctcaaatccataattttctcaaagtttgttat 1138631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 101
Target Start/End: Original strand, 1384373 - 1384421
Alignment:
Q  53 ttaactaaatttatcataatttcctcaagtttataattttatcaaagtt 101  Q
    |||||||||||||| || |||||||||| | ||||||||| ||||||||    
T  1384373 ttaactaaatttattatgatttcctcaaatctataattttctcaaagtt 1384421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0653 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0653
Description:

Target: scaffold0653; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 45 - 107
Target Start/End: Original strand, 3430 - 3492
Alignment:
Q  45 tatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    |||| ||||||| |||||| | ||| |||||||||| ||||||||||||||||||||||||||    
T  3430 tatggttcttaattaaattcaccatgatttcctcaaatttataattttatcaaagtttgttat 3492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 39 - 107
Target Start/End: Complemental strand, 7226 - 7158
Alignment:
Q  39 ttttcttatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    ||||| |||| |||||||||||||| ||||| |||||||||| |  |||||||| ||||||||||||||    
T  7226 ttttcgtatggttcttaactaaattcatcatgatttcctcaaatccataattttctcaaagtttgttat 7158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 39 - 107
Target Start/End: Original strand, 17426659 - 17426727
Alignment:
Q  39 ttttcttatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    ||||| |||| |||||||||||||| | ||| |||||||||| | ||||||||| ||||||||||||||    
T  17426659 ttttcgtatggttcttaactaaattcaccatgatttcctcaaatctataattttctcaaagtttgttat 17426727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 27 - 107
Target Start/End: Original strand, 23940823 - 23940903
Alignment:
Q  27 tttcttaaatgattttcttatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    |||||||| || ||||| ||||||||||||||||||| | ||| |||||||||| |   ||||||| ||||||||||||||    
T  23940823 tttcttaagtgcttttcgtatgattcttaactaaattcaccatgatttcctcaaatccgtaattttctcaaagtttgttat 23940903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 39 - 107
Target Start/End: Original strand, 29780990 - 29781058
Alignment:
Q  39 ttttcttatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    ||||| |||| || ||||||||||||| |||||||||||||| |  |||||||| ||||||||||||||    
T  29780990 ttttcgtatggtttttaactaaatttaccataatttcctcaaatccataattttctcaaagtttgttat 29781058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 107
Target Start/End: Complemental strand, 8210457 - 8210395
Alignment:
Q  45 tatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    ||||||||||||| ||||| ||||| |||||||||| |  |||||||| ||||||||||||||    
T  8210457 tatgattcttaaccaaattcatcatgatttcctcaaatccataattttctcaaagtttgttat 8210395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 107
Target Start/End: Complemental strand, 38520167 - 38520090
Alignment:
Q  30 cttaaatgattttcttatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    ||||| || ||||| |||| || ||||||||||| | ||| |||||||||| || |||||||| ||||||||||||||    
T  38520167 cttaagtgcttttcgtatgttttttaactaaattcaccatgatttcctcaaattcataattttctcaaagtttgttat 38520090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 107
Target Start/End: Original strand, 4262007 - 4262075
Alignment:
Q  39 ttttcttatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    ||||| |||| |||||||||||||| |  || ||||||||||||  |||||||| ||||||||||||||    
T  4262007 ttttcgtatggttcttaactaaattcactatgatttcctcaagtccataattttctcaaagtttgttat 4262075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 107
Target Start/End: Original strand, 11828627 - 11828695
Alignment:
Q  39 ttttcttatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    ||||| |||| |||||||||||||| | |||||||||||||| |  || ||||| ||||||||||||||    
T  11828627 ttttcgtatggttcttaactaaattcaccataatttcctcaaatccattattttctcaaagtttgttat 11828695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 107
Target Start/End: Complemental strand, 38629614 - 38629546
Alignment:
Q  39 ttttcttatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    ||||| |||| |||||||||||||| | ||| |||||||||| || |||||||| ||||||||| ||||    
T  38629614 ttttcgtatggttcttaactaaattcaccatgatttcctcaaattcataattttctcaaagtttattat 38629546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 107
Target Start/End: Complemental strand, 40891153 - 40891085
Alignment:
Q  39 ttttcttatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    ||||| |||| |||||||||||||| | ||| |||||||||| |  |||||||| ||||||||||||||    
T  40891153 ttttcgtatggttcttaactaaattcaccatgatttcctcaaatccataattttctcaaagtttgttat 40891085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 107
Target Start/End: Complemental strand, 40393862 - 40393795
Alignment:
Q  39 ttttcttatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    |||| ||||| |||||| ||||||| | |||||||||||||| ||| ||||||| ||||| ||||||||    
T  40393862 ttttattatggttcttagctaaattcaccataatttcctcaaattt-taattttctcaaaatttgttat 40393795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 107
Target Start/End: Original strand, 3607766 - 3607828
Alignment:
Q  45 tatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    |||| |||||||||||||| ||||| |||||||||| |  |||||||| ||||||||||||||    
T  3607766 tatggttcttaactaaattcatcatgatttcctcaaatccataattttctcaaagtttgttat 3607828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 107
Target Start/End: Complemental strand, 50627280 - 50627203
Alignment:
Q  30 cttaaatgattttcttatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    |||| ||| ||||| |||| ||||||||||||  |||||| |||||||||| |  |||||||| ||||||||||||||    
T  50627280 cttatatgcttttcgtatggttcttaactaaaaatatcatgatttcctcaaatccataattttctcaaagtttgttat 50627203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 107
Target Start/End: Complemental strand, 957729 - 957661
Alignment:
Q  39 ttttcttatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    ||||| ||||||||||||||||||| | ||| |||| ||||| |  |||||||| ||||||||||||||    
T  957729 ttttcgtatgattcttaactaaattcaccatgattttctcaaatccataattttctcaaagtttgttat 957661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 107
Target Start/End: Original strand, 2854563 - 2854631
Alignment:
Q  39 ttttcttatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    ||||| |||| |||||||||||||| |  || |||||||||| || |||||||| ||||||||||||||    
T  2854563 ttttcgtatggttcttaactaaattcactatgatttcctcaaattcataattttctcaaagtttgttat 2854631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 107
Target Start/End: Complemental strand, 6079524 - 6079456
Alignment:
Q  39 ttttcttatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    ||||| |||| |||||||||||||| | ||| |||||||||| |  |||||||| ||||||||||||||    
T  6079524 ttttcgtatggttcttaactaaattcaccatgatttcctcaaatccataattttctcaaagtttgttat 6079456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 107
Target Start/End: Original strand, 9978082 - 9978150
Alignment:
Q  39 ttttcttatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    ||||| ||||||||||||||||||| |  || |||||||||| |  |||||||| ||||||||||||||    
T  9978082 ttttcgtatgattcttaactaaattcactatgatttcctcaaatccataattttctcaaagtttgttat 9978150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 107
Target Start/End: Original strand, 23698533 - 23698601
Alignment:
Q  39 ttttcttatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    ||||| |||| |||||||||||||| |  || |||||||||| || |||||||| ||||||||||||||    
T  23698533 ttttcgtatggttcttaactaaattcactatgatttcctcaaattcataattttctcaaagtttgttat 23698601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 107
Target Start/End: Complemental strand, 40647258 - 40647190
Alignment:
Q  39 ttttcttatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    ||||| ||||||| ||||||||||| | ||| |||||||||| |  |||||||| ||||||||||||||    
T  40647258 ttttcgtatgatttttaactaaattcaccatgatttcctcaaatccataattttctcaaagtttgttat 40647190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 107
Target Start/End: Original strand, 48645045 - 48645113
Alignment:
Q  39 ttttcttatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    ||||| |||| ||||||||||||  |||||| |||||||||| |  |||||||| ||||||||||||||    
T  48645045 ttttcgtatgcttcttaactaaaaatatcatgatttcctcaaatccataattttctcaaagtttgttat 48645113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 107
Target Start/End: Original strand, 48954245 - 48954313
Alignment:
Q  39 ttttcttatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    ||||| |||| |||||||||||||| |  || |||||||||| || |||||||| ||||||||||||||    
T  48954245 ttttcatatggttcttaactaaattcactatgatttcctcaaattcataattttctcaaagtttgttat 48954313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 107
Target Start/End: Original strand, 50856352 - 50856420
Alignment:
Q  39 ttttcttatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    ||||| ||||||||||| ||||||| | ||| ||||||||||||  |||||||| ||||| ||||||||    
T  50856352 ttttcgtatgattcttagctaaattcaccattatttcctcaagtccataattttctcaaaatttgttat 50856420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 107
Target Start/End: Complemental strand, 5189618 - 5189541
Alignment:
Q  30 cttaaatgattttcttatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    |||| ||| ||||| |||| |||||||||||||| | ||| ||||||| || |  |||||||| ||||||||||||||    
T  5189618 cttagatgcttttcgtatggttcttaactaaattcaccatgatttccttaaatccataattttctcaaagtttgttat 5189541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 107
Target Start/End: Original strand, 19954953 - 19955010
Alignment:
Q  50 ttcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    |||||||||||||| | ||| |||||||||| |  |||||||| ||||||||||||||    
T  19954953 ttcttaactaaattcaccatgatttcctcaaatccataattttctcaaagtttgttat 19955010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 107
Target Start/End: Complemental strand, 1387918 - 1387850
Alignment:
Q  39 ttttcttatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    ||||| |||| ||||||||||||  || ||| |||||||||| || |||||||| ||||||||| ||||    
T  1387918 ttttcgtatggttcttaactaaagataccatgatttcctcaaattcataattttctcaaagtttattat 1387850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 107
Target Start/End: Original strand, 2125101 - 2125169
Alignment:
Q  39 ttttcttatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    ||||| |||| |||||||||||||| | ||| ||||  | || ||||||||||| ||||||||||||||    
T  2125101 ttttcgtatggttcttaactaaattcaccatgatttttttaaatttataattttctcaaagtttgttat 2125169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 107
Target Start/End: Original strand, 4299435 - 4299491
Alignment:
Q  51 tcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    ||||||||||||| | ||| |||||||||| |  |||||||| ||||||||||||||    
T  4299435 tcttaactaaattcaccattatttcctcaaatccataattttctcaaagtttgttat 4299491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 107
Target Start/End: Complemental strand, 15324767 - 15324699
Alignment:
Q  39 ttttcttatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    ||||| |||| |||||||||||||| |  || |||||||||| |  |||||||| ||||||||||||||    
T  15324767 ttttcgtatggttcttaactaaattcactatgatttcctcaaatccataattttctcaaagtttgttat 15324699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 107
Target Start/End: Complemental strand, 26208565 - 26208497
Alignment:
Q  39 ttttcttatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    ||||| |||| |||| ||||||||| | ||||||||| |||| |  |||||||| ||||||||||||||    
T  26208565 ttttcgtatggttctgaactaaattcaccataatttcttcaaatccataattttctcaaagtttgttat 26208497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 107
Target Start/End: Original strand, 27240955 - 27241023
Alignment:
Q  39 ttttcttatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    ||||| |||| |||||||||||||| | ||| |||| ||||| |  |||||||| ||||||||||||||    
T  27240955 ttttcgtatggttcttaactaaattcaccatgattttctcaaatccataattttctcaaagtttgttat 27241023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 106
Target Start/End: Complemental strand, 36880660 - 36880584
Alignment:
Q  30 cttaaatgattttcttatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgtta 106  Q
    |||| ||| ||||| |||| ||||||||||||  || ||| |||||||||| |  |||||||| |||||||||||||    
T  36880660 cttagatgcttttcgtatggttcttaactaaaaataccatgatttcctcaaatccataattttctcaaagtttgtta 36880584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 107
Target Start/End: Original strand, 47940601 - 47940669
Alignment:
Q  39 ttttcttatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    ||||| |||| |||||||||||||| | ||| |||||||| | |  |||||||| ||||||||||||||    
T  47940601 ttttcgtatggttcttaactaaattcaccatgatttcctcgaatccataattttctcaaagtttgttat 47940669  T

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Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 107
Target Start/End: Original strand, 51276726 - 51276794
Alignment:
Q  39 ttttcttatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    ||||| |||| |||||||||||||| || || |||||||||| |  |||||||| ||||||||| ||||    
T  51276726 ttttcgtatggttcttaactaaattcattatgatttcctcaaatccataattttctcaaagtttattat 51276794  T

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Target: scaffold0122 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 107
Target Start/End: Complemental strand, 45974 - 45906
Alignment:
Q  39 ttttcttatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    |||||||||| |||||||||||||| | ||| |||| ||||| |  |||||||| ||||||||||||||    
T  45974 ttttcttatggttcttaactaaattcaccatgattttctcaaatccataattttctcaaagtttgttat 45906  T

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Target: scaffold0107 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 107
Target Start/End: Complemental strand, 51203 - 51135
Alignment:
Q  39 ttttcttatgattcttaactaaatttatcataatttcctcaagtttataattttatcaaagtttgttat 107  Q
    ||||| |||| |||||||||||||| |  || ||||||| || || |||||||| ||||||||||||||    
T  51203 ttttcatatggttcttaactaaattcactatgatttccttaaattcataattttctcaaagtttgttat 51135  T

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