View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10886_5 (Length: 306)
Name: NF10886_5
Description: NF10886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10886_5 |
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Alignment Details
Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 150 - 221
Target Start/End: Original strand, 39948638 - 39948709
Alignment:
| Q |
150 |
gaaattttgttcttgttaattctctaaaatggattactgatgatgattaagaataaaaataggttgattttt |
221 |
Q |
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| T |
39948638 |
gaaattttgttcttgttaattctctaaaatggattaatgatgatgattaagaataaaaataggttgattttt |
39948709 |
T |
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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 244
Target Start/End: Original strand, 39948715 - 39948743
Alignment:
| Q |
216 |
attttttcttcttccatgtttatgtttgg |
244 |
Q |
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| T |
39948715 |
attttttcttcttccatgtttatgtttgg |
39948743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 150 - 221
Target Start/End: Complemental strand, 34800565 - 34800491
Alignment:
| Q |
150 |
gaaattttgttcttgttaattctctaaaatggatta---ctgatgatgattaagaataaaaataggttgattttt |
221 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |
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| T |
34800565 |
gaaattttgttcttgttaattctctaaaatggattaatgatgatgatgattaagaataaaaatatgttgattttt |
34800491 |
T |
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