View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10886_low_3 (Length: 236)

Name: NF10886_low_3

Description: NF10886

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF10886_low_3

[»] chr3 (1 HSPs)

[»] chr5 (1 HSPs)

Target: chr3 (Bit Score: 159; Significance: 8e-85; HSPs: 1)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 159; E-Value: 8e-85

Query Start/End: Original strand, 18 - 225

Target Start/End: Complemental strand, 33531278 - 33531071

Alignment:

Q	18	gaaagtcaaggattggaaagttatattgaaggaaacacagtctgcaatatccttaggtgtggattcagctccaaaggttagtttctttggttaaatgttt	117	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	33531278	gaaagtcaaggattggaaagttatattgaaggaaacacagtctgcaatatccttaggtgtggattcagctccaaaggttagtttctttggttaaatgttt	33531179	T

Q	118	tattttaggcactcctacannnnnnnnaatcatatgttactcaactcattggccaataaccctcttatgctgattnnnnnnntggttatgtctaccaggt	217	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	33531178	tattttaggcactcctacattttttttaatcatatgttactcaactcattggccaataaccctcttatgctgattaaaaaaatggttatgtctaccaggt	33531079	T

Q	218	ctctgctt	225	Q
		\|\| \|\|\|\|\|
T	33531078	ctatgctt	33531071	T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 41; E-Value: 0.00000000000002

Query Start/End: Original strand, 46 - 106

Target Start/End: Complemental strand, 26209143 - 26209083

Alignment:

Q	46	aaggaaacacagtctgcaatatccttaggtgtggattcagctccaaaggttagtttctttg	106	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\|\|
T	26209143	aaggaaacacagtctgcattatccttaggtgccgattcagctccacaggttagttcctttg	26209083	T

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