View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10887_low_1 (Length: 404)
Name: NF10887_low_1
Description: NF10887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10887_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 20 - 379
Target Start/End: Original strand, 45725259 - 45725622
Alignment:
| Q |
20 |
gcgtgaccatggccaagtggatggaagccaaatcaagttcatgattttgactgctcttatctcctttattgcaaagagagattctctttctannnnnnnn |
119 |
Q |
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| T |
45725259 |
gcgtgaccatggccaagtggatggaagccaaatcaagttcatgattttgactgctcttatctcctttattgcaaagagagattctctttctattttttt- |
45725357 |
T |
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| Q |
120 |
cttttgttcagtggattcatgtccatttcatttacccaagtatttaaattttacgtaacaataaattagcaacactattatagtatcatcacttttttgc |
219 |
Q |
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| T |
45725358 |
cttttgttcagtggattcttatccatttcatttacccaagtatttaaattttacgtaacaataaattagcaacactattatagtatcatcacttttttgc |
45725457 |
T |
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| Q |
220 |
tactacatttgcaattgttttatgcttatgggatctatttaacttgaagtgcaataaaaatgtactatagttagatgggtacagtgtaatactcaagtga |
319 |
Q |
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| T |
45725458 |
tactacatttgcaattgttttatgcttatgggatctatttaacttgaagtgcaataaaaatgtactatagttagatgggtacagtgtaatactcaagtga |
45725557 |
T |
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| Q |
320 |
tgc-----caatgatcgaagtacgagttgtaaataagatcaatttgtgcagatagatatgtgttg |
379 |
Q |
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| T |
45725558 |
tgccaatgcaatgatcgaagtacgagttgtaaataagatcaatttgtgcagatagatatgtgttg |
45725622 |
T |
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Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 41 - 111
Target Start/End: Complemental strand, 27585645 - 27585573
Alignment:
| Q |
41 |
tggaagccaaatcaa-gttcatgattttgactgct-cttatctcctttattgcaaagagagattctctttcta |
111 |
Q |
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| T |
27585645 |
tggaaaccaaatcaaagttcctgattttgacttcgacctatctcctttattgcaaagagagattctctttcta |
27585573 |
T |
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