View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10887_low_2 (Length: 403)
Name: NF10887_low_2
Description: NF10887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10887_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 2761687 - 2761353
Alignment:
| Q |
1 |
aaattcaacacgttcacttatcattcaaggaaatcacaagttctataaattggaatgatttgtagccaatttattccatgcaaatactcttacttacaca |
100 |
Q |
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| T |
2761687 |
aaattcaatacgttcacttatcattcaaggaaatcacaagttctataaattggaattatttgtagccaatttattccatgcaaatactcttacttacaca |
2761588 |
T |
|
| Q |
101 |
atggccaaaaccatcactgcttcactaattttgattctccttattgttgcaactctgaatgattatagtgttgagggtgcaggaaaagagaaagatggtg |
200 |
Q |
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| T |
2761587 |
atggccaaaaccatcactgcttcactaattttgattctccttattgttgcaactctgaatgattatagtgttgaaggtgcaggaaaagagaaagatgttg |
2761488 |
T |
|
| Q |
201 |
gtgttgacgacatatctaaaaagtttggggaagaaacagattgttacattttgtatttgaaatgtgtggtatttcgtatccttatcttttgtcctgcgta |
300 |
Q |
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| T |
2761487 |
gtgttgacgacatatctaaaaagtttgggcaagaaacagattgttacattttgtatttgaaatgtgtggtatttcgtatccttatcttttgtcctgcgta |
2761388 |
T |
|
| Q |
301 |
ctctacgttttgtcttcatcatgaaactaccgcag |
335 |
Q |
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| T |
2761387 |
ctctacgttttgtcttcatcatgaaactaccgcag |
2761353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 354 - 385
Target Start/End: Complemental strand, 2761337 - 2761306
Alignment:
| Q |
354 |
ctcctaaagctgaaaaccttccatgatggacc |
385 |
Q |
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| T |
2761337 |
ctcctaaagctgaaaaccttccatgatggacc |
2761306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 11952641 - 11952570
Alignment:
| Q |
13 |
ttcacttatcattcaaggaaatcacaagttctataaattggaatgatttgtagccaatttattccatgcaaa |
84 |
Q |
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| T |
11952641 |
ttcacttctcatttaaggaaatcactagttctataaattagactaatttagagcccttttattccatgcaaa |
11952570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 182
Target Start/End: Complemental strand, 41814495 - 41814414
Alignment:
| Q |
101 |
atggccaaaaccatcactgcttcactaattttgattctccttattgttgcaactctgaatgattatagtgttgagggtgcag |
182 |
Q |
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| T |
41814495 |
atggcaaaaatcatcactacttcattgattttagttctccttgttgtggcaattatcaatgattgtagtgttgagggtgcag |
41814414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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