View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10888_10 (Length: 358)
Name: NF10888_10
Description: NF10888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10888_10 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 358
Target Start/End: Original strand, 37406885 - 37407242
Alignment:
| Q |
1 |
tttccgacaatgaaataaattctaccattgtttggccactcaaaaaaggtgtcacacttcatgctattgttgatgcttgtcatagtggaacaattcttga |
100 |
Q |
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| T |
37406885 |
tttccgacaatgaaataaattctaccattgtttggccactcaaaaaaggtgtcacacttcatgctattgttgatgcttgtcatagtggaacaattcttga |
37406984 |
T |
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| Q |
101 |
tcttttacatgtctacaactatcaaaggtagtctaattttatggttccataaaatgaatagagnnnnnnnnnntcaatagataatatctcgacacgcttt |
200 |
Q |
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| T |
37406985 |
tcttttacatgtctacaactatcaaaggtagtctaattttatggtaccctaaaatgaatagagaaaaaaaaaatcaatagataatatctcgacacgcttt |
37407084 |
T |
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| Q |
201 |
ttatttgtaatacatgtaaatataatatcaaccgttgatttgttcagcgataatcaatattatcttgcagtggcatttgggaggataacaagcccccttc |
300 |
Q |
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| T |
37407085 |
ttatttgtaatacatgtaaatataatatcaaccgttgatttgttcagcgataatcgatattatcttgcagtggcatttgggaggataacaagcccccttc |
37407184 |
T |
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| Q |
301 |
tagagaccctataagaaaacatacaagtggtggattggctatttgtctcagtgcttgt |
358 |
Q |
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| T |
37407185 |
tagagaccctataagaaaacatacaagtggtggattggctatttgtctcagtgcttgt |
37407242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 12 - 103
Target Start/End: Complemental strand, 1719937 - 1719846
Alignment:
| Q |
12 |
gaaataaattctaccattgtttggccactcaaaaaaggtgtcacacttcatgctattgttgatgcttgtcatagtggaacaattcttgatct |
103 |
Q |
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| T |
1719937 |
gaaatcaattctaccattgttcggccactcaaggaaggtgtcaaacttcatgctattattgatgcttgtcatagtggaacaactcttgatct |
1719846 |
T |
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