View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10888_11 (Length: 350)
Name: NF10888_11
Description: NF10888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10888_11 |
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Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 23 - 284
Target Start/End: Complemental strand, 37406910 - 37406649
Alignment:
| Q |
23 |
ggtagaatttatttcattgtcggaaatcattccttctttaatgaaatccacaggacaaagagtctcatcaaacccatcaatttcatcttctttgaaatct |
122 |
Q |
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| T |
37406910 |
ggtagaatttatttcattgtcggaaatcattccttctttaatgaaatcaacaggacaaagagtctcatcaaacccatcaatttcatcttctttgaaatct |
37406811 |
T |
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| Q |
123 |
ggttgttgcaagccatgtcctgaaaagtaaaatactaaagagtctcctgcctcacagtctttcacaagccaccttaaggactccaatatgttgtgttttg |
222 |
Q |
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| T |
37406810 |
ggttgttgcaagccatgtcctgaaaagtaaaatactaaagagtctcctgcctcacagtctttcacaagccaccttaaggactccaatatgttgtgtttcg |
37406711 |
T |
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| Q |
223 |
ttggtattaaatcgacattctgctcttgttctacgtaaaattcgttttagtttacaaatatg |
284 |
Q |
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| T |
37406710 |
ttggtattaaatcgacattctgctcttgttctgcgtaaaattcgttttagtttacaaatatg |
37406649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 312 - 346
Target Start/End: Complemental strand, 37406633 - 37406599
Alignment:
| Q |
312 |
tgtagcacaatgtggaggttaagcatgtagcttag |
346 |
Q |
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| T |
37406633 |
tgtagcacaatgtggaggttaagcatgtagcttag |
37406599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 116
Target Start/End: Original strand, 1719923 - 1720016
Alignment:
| Q |
23 |
ggtagaatttatttcattgtcggaaatcattccttctttaatgaaatccacaggacaaagagtctcatcaaacccatcaatttcatcttctttg |
116 |
Q |
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||||||||| ||||| | ||| | |||||||||||| |||||||||| ||||| |||| ||| ||||||||||| |||| |||||| |||||| |
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| T |
1719923 |
ggtagaattgatttcgtcgtcagtgatcattccttctctaatgaaatcaacagggcaaatagtttcatcaaacccgtcaagttcatcatctttg |
1720016 |
T |
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