View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10888_15 (Length: 302)

Name: NF10888_15
Description: NF10888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10888_15
NF10888_15
[»] chr3 (10 HSPs)
chr3 (9-293)||(24413515-24413802)
chr3 (9-126)||(24401109-24401226)
chr3 (150-274)||(24420388-24420515)
chr3 (9-132)||(24420159-24420282)
chr3 (9-129)||(24378272-24378392)
chr3 (162-202)||(41028956-41028996)
chr3 (150-194)||(53736206-53736250)
chr3 (155-202)||(905068-905115)
chr3 (163-208)||(16790462-16790507)
chr3 (155-199)||(49587014-49587057)
[»] chr5 (6 HSPs)
chr5 (155-202)||(20982233-20982280)
chr5 (155-202)||(10391278-10391325)
chr5 (155-202)||(13224354-13224401)
chr5 (155-202)||(26516223-26516270)
chr5 (155-201)||(7096225-7096271)
chr5 (162-198)||(29588809-29588845)
[»] scaffold0590 (1 HSPs)
scaffold0590 (155-202)||(1172-1219)
[»] scaffold0275 (1 HSPs)
scaffold0275 (155-202)||(2756-2803)
[»] chr4 (8 HSPs)
chr4 (155-202)||(4191664-4191711)
chr4 (155-200)||(47970245-47970290)
chr4 (162-202)||(2980576-2980616)
chr4 (151-202)||(21157693-21157744)
chr4 (155-202)||(46415890-46415937)
chr4 (156-198)||(8130103-8130145)
chr4 (162-203)||(52645624-52645665)
chr4 (155-191)||(24160926-24160962)
[»] chr1 (7 HSPs)
chr1 (155-200)||(13037791-13037836)
chr1 (154-202)||(4202226-4202274)
chr1 (155-202)||(23370396-23370443)
chr1 (155-202)||(23373388-23373435)
chr1 (151-202)||(38651503-38651554)
chr1 (162-199)||(41638177-41638214)
chr1 (162-202)||(45975865-45975905)
[»] chr6 (8 HSPs)
chr6 (162-202)||(29249399-29249439)
chr6 (162-202)||(31668790-31668830)
chr6 (155-202)||(4247732-4247779)
chr6 (163-202)||(8010282-8010321)
chr6 (155-197)||(31461608-31461650)
chr6 (154-202)||(2727953-2728001)
chr6 (162-202)||(10452465-10452505)
chr6 (155-199)||(33259744-33259788)
[»] chr8 (5 HSPs)
chr8 (155-202)||(14482127-14482174)
chr8 (162-200)||(8536153-8536191)
chr8 (162-203)||(5290565-5290606)
chr8 (162-202)||(8629034-8629074)
chr8 (164-208)||(12972775-12972819)
[»] chr7 (8 HSPs)
chr7 (155-202)||(7244627-7244674)
chr7 (155-198)||(27481392-27481435)
chr7 (155-201)||(24973870-24973916)
chr7 (155-201)||(33894549-33894595)
chr7 (155-200)||(3610838-3610883)
chr7 (162-202)||(991995-992035)
chr7 (162-202)||(45078218-45078258)
chr7 (162-202)||(46213728-46213768)
[»] chr2 (6 HSPs)
chr2 (155-202)||(10190204-10190251)
chr2 (155-193)||(32848844-32848882)
chr2 (155-196)||(914012-914053)
chr2 (157-202)||(33197339-33197384)
chr2 (162-202)||(33267621-33267661)
chr2 (155-195)||(41033048-41033088)
[»] scaffold0654 (1 HSPs)
scaffold0654 (153-202)||(6733-6782)
[»] scaffold0014 (1 HSPs)
scaffold0014 (153-202)||(116652-116701)


Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 9 - 293
Target Start/End: Complemental strand, 24413802 - 24413515
Alignment:
Q  9 atgaatgacattacaatctgaacaactccaaacaacaccatatatatattagcctcatatctacaaggagcttggtgtccttctttatgatagcaatttg 108  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24413802 atgaacgacattacaatctgaacaactccaaacaacaccatatatatattagcctcatatctacaaggagcttggtgtccttctttatgatagcaatttg 24413703  T
Q  109 atctcatgatagccctgtattcgtcagtacaataatggattattagtttatcctttgttatagaaatagctcatacgtaagcacttatatgatacatgct 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24413702 atctcatgatagccctgtattcgtcagtacaataatggattattagtttatcctttgttatagaaatagctcatacgtaagcacttatatgatacatgct 24413603  T
Q  209 cgggggcgaagctatgtataaagttgagtgggcatgtgcctg---tactaattccattctagtatataaaattagttctgatattctt 293  Q
    ||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||| ||||||||    
T  24413602 cgggggcgaagctatgtataaagttgagtgggcatgtgcctgcactactaattccattctagtatataaaattagttctaatattctt 24413515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 9 - 126
Target Start/End: Complemental strand, 24401226 - 24401109
Alignment:
Q  9 atgaatgacattacaatctgaacaactccaaacaacaccatatatatattagcctcatatctacaaggagcttggtgtccttctttatgatagcaatttg 108  Q
    ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| || ||||||||||| | ||| ||||| || ||||| |||||||    
T  24401226 atgaacgacattacaatctgaacaactccaaacagcaccatatatatattagcctcgtagctacaaggagcattgtgcccttccttgtgataacaatttg 24401127  T
Q  109 atctcatgatagccctgt 126  Q
    ||||||| ||||||||||    
T  24401126 atctcataatagccctgt 24401109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 150 - 274
Target Start/End: Original strand, 24420388 - 24420515
Alignment:
Q  150 attagtttatcctttgttatagaaatagctcatacgtaagcacttatatgatacatgctcgggggcgaagctatgtataaagttgagtgggcatgtgcct 249  Q
    |||||||||||||||||||||||||| ||| ||||||||||| ||||||| ||||||||  ||||| |||||||||| |||||||||||| |||||||||    
T  24420388 attagtttatcctttgttatagaaattgcttatacgtaagcatttatatgttacatgcttaggggcaaagctatgtagaaagttgagtggtcatgtgcct 24420487  T
Q  250 g---tactaattccattctagtatataa 274  Q
    |   |||||||| |||||||||||||||    
T  24420488 gcactactaatttcattctagtatataa 24420515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 9 - 132
Target Start/End: Original strand, 24420159 - 24420282
Alignment:
Q  9 atgaatgacattacaatctgaacaactccaaacaacaccatatatatattagcctcatatctacaaggagcttggtgtccttctttatgatagcaatttg 108  Q
    ||||| ||||||||||||||||||| ||||||||  | |||||| |  ||| |  ||||  |||||||||||||||||||||||||||||||||||||||    
T  24420159 atgaacgacattacaatctgaacaagtccaaacagtatcatatacaagttaccaccataagtacaaggagcttggtgtccttctttatgatagcaatttg 24420258  T
Q  109 atctcatgatagccctgtattcgt 132  Q
    || |||| ||||||||||||||||    
T  24420259 atttcataatagccctgtattcgt 24420282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 9 - 129
Target Start/End: Complemental strand, 24378392 - 24378272
Alignment:
Q  9 atgaatgacattacaatctgaacaactccaaacaacaccatatatatattagcctcatatctacaaggagcttggtgtccttctttatgatagcaatttg 108  Q
    ||||||||||||||||||||||||||||||||||  | |||||| | |||| || |||| |||||||||||    || ||||| || ||||| |||||||    
T  24378392 atgaatgacattacaatctgaacaactccaaacagtatcatatacaaattacccccatacctacaaggagcaccatgcccttccttgtgataacaatttg 24378293  T
Q  109 atctcatgatagccctgtatt 129  Q
    | ||||| |||||||||||||    
T  24378292 aactcataatagccctgtatt 24378272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 202
Target Start/End: Original strand, 41028956 - 41028996
Alignment:
Q  162 tttgttatagaaatagctcatacgtaagcacttatatgata 202  Q
    |||||||||||||||||| |||| |||||||||||||||||    
T  41028956 tttgttatagaaatagcttatacataagcacttatatgata 41028996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 194
Target Start/End: Original strand, 53736206 - 53736250
Alignment:
Q  150 attagtttatcctttgttatagaaatagctcatacgtaagcactt 194  Q
    |||| |||||| ||||||||||||||| |||||||||||||||||    
T  53736206 attattttatcttttgttatagaaataactcatacgtaagcactt 53736250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 155 - 202
Target Start/End: Original strand, 905068 - 905115
Alignment:
Q  155 tttatcctttgttatagaaatagctcatacgtaagcacttatatgata 202  Q
    |||||| |||||||||||||||||| |||| ||||| |||||||||||    
T  905068 tttatcttttgttatagaaatagcttatacttaagcgcttatatgata 905115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 208
Target Start/End: Original strand, 16790462 - 16790507
Alignment:
Q  163 ttgttatagaaatagctcatacgtaagcacttatatgatacatgct 208  Q
    |||||||| |||||||| |||| ||||||||||||||||| |||||    
T  16790462 ttgttataaaaatagcttatacataagcacttatatgataaatgct 16790507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 199
Target Start/End: Original strand, 49587014 - 49587057
Alignment:
Q  155 tttatcctttgttatagaaatagctcatacgtaagcacttatatg 199  Q
    |||||| |||||||||||||||||| ||| |||||||||||||||    
T  49587014 tttatcttttgttatagaaatagcttata-gtaagcacttatatg 49587057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 155 - 202
Target Start/End: Original strand, 20982233 - 20982280
Alignment:
Q  155 tttatcctttgttatagaaatagctcatacgtaagcacttatatgata 202  Q
    ||||||||||||||||||||||||| |||| |||||||||||||||||    
T  20982233 tttatcctttgttatagaaatagcttatacataagcacttatatgata 20982280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 155 - 202
Target Start/End: Complemental strand, 10391325 - 10391278
Alignment:
Q  155 tttatcctttgttatagaaatagctcatacgtaagcacttatatgata 202  Q
    |||||| ||||||||| |||||||| ||||||||||||||||||||||    
T  10391325 tttatcttttgttataaaaatagcttatacgtaagcacttatatgata 10391278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 155 - 202
Target Start/End: Complemental strand, 13224401 - 13224354
Alignment:
Q  155 tttatcctttgttatagaaatagctcatacgtaagcacttatatgata 202  Q
    |||||| |||||||||||||||||| |||| ||||||||| |||||||    
T  13224401 tttatcttttgttatagaaatagcttatacataagcacttctatgata 13224354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 155 - 202
Target Start/End: Complemental strand, 26516270 - 26516223
Alignment:
Q  155 tttatcctttgttatagaaatagctcatacgtaagcacttatatgata 202  Q
    |||||| |||||| ||||||||||| |||| |||||||||||||||||    
T  26516270 tttatcttttgttttagaaatagcttatacataagcacttatatgata 26516223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 201
Target Start/End: Original strand, 7096225 - 7096271
Alignment:
Q  155 tttatcctttgttatagaaatagctcatacgtaagcacttatatgat 201  Q
    |||||| |||||||||||||||||| |||| ||||||||| ||||||    
T  7096225 tttatcttttgttatagaaatagcttatacataagcacttgtatgat 7096271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 198
Target Start/End: Complemental strand, 29588845 - 29588809
Alignment:
Q  162 tttgttatagaaatagctcatacgtaagcacttatat 198  Q
    |||||||||||||||||| |||| |||||||||||||    
T  29588845 tttgttatagaaatagcttatacataagcacttatat 29588809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 155 - 202
Target Start/End: Original strand, 1172 - 1219
Alignment:
Q  155 tttatcctttgttatagaaatagctcatacgtaagcacttatatgata 202  Q
    |||||| |||||||||||||||||| |||| |||||||||||||||||    
T  1172 tttatcttttgttatagaaatagcttatacataagcacttatatgata 1219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 155 - 202
Target Start/End: Complemental strand, 2803 - 2756
Alignment:
Q  155 tttatcctttgttatagaaatagctcatacgtaagcacttatatgata 202  Q
    |||||| |||||||||||||||||| |||| |||||||||||||||||    
T  2803 tttatcttttgttatagaaatagcttatacataagcacttatatgata 2756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 155 - 202
Target Start/End: Complemental strand, 4191711 - 4191664
Alignment:
Q  155 tttatcctttgttatagaaatagctcatacgtaagcacttatatgata 202  Q
    |||||| |||||||||||||||||| |||| |||||||||||||||||    
T  4191711 tttatcttttgttatagaaatagcttatacataagcacttatatgata 4191664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 155 - 200
Target Start/End: Complemental strand, 47970290 - 47970245
Alignment:
Q  155 tttatcctttgttatagaaatagctcatacgtaagcacttatatga 200  Q
    |||||| |||||||||||||||||| |||| |||||||||||||||    
T  47970290 tttatcttttgttatagaaatagcttatacataagcacttatatga 47970245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 202
Target Start/End: Original strand, 2980576 - 2980616
Alignment:
Q  162 tttgttatagaaatagctcatacgtaagcacttatatgata 202  Q
    |||||||||||||||||| |||| |||||||||||||||||    
T  2980576 tttgttatagaaatagcttatacataagcacttatatgata 2980616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 151 - 202
Target Start/End: Complemental strand, 21157744 - 21157693
Alignment:
Q  151 ttagtttatcctttgttatagaaatagctcatacgtaagcacttatatgata 202  Q
    ||||||||| |||||||||  |||||||| |||| |||||||||||||||||    
T  21157744 ttagtttatactttgttatcaaaatagctgatacataagcacttatatgata 21157693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 155 - 202
Target Start/End: Original strand, 46415890 - 46415937
Alignment:
Q  155 tttatcctttgttatagaaatagctcatacgtaagcacttatatgata 202  Q
    |||||| |||||||| ||||||||| ||||||||||||||| ||||||    
T  46415890 tttatcttttgttattgaaatagcttatacgtaagcacttagatgata 46415937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 198
Target Start/End: Complemental strand, 8130145 - 8130103
Alignment:
Q  156 ttatcctttgttatagaaatagctcatacgtaagcacttatat 198  Q
    ||||| ||||||||||||| | |||||||||||||||||||||    
T  8130145 ttatcttttgttatagaaagaactcatacgtaagcacttatat 8130103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 203
Target Start/End: Complemental strand, 52645665 - 52645624
Alignment:
Q  162 tttgttatagaaatagctcatacgtaagcacttatatgatac 203  Q
    ||||||| ||||||||||||||| ||| ||||||||||||||    
T  52645665 tttgttacagaaatagctcatacataaacacttatatgatac 52645624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 191
Target Start/End: Complemental strand, 24160962 - 24160926
Alignment:
Q  155 tttatcctttgttatagaaatagctcatacgtaagca 191  Q
    ||||||||||||||||||||||||| |||| ||||||    
T  24160962 tttatcctttgttatagaaatagcttatacataagca 24160926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 155 - 200
Target Start/End: Complemental strand, 13037836 - 13037791
Alignment:
Q  155 tttatcctttgttatagaaatagctcatacgtaagcacttatatga 200  Q
    |||||| |||||||||||||||||| |||| |||||||||||||||    
T  13037836 tttatcttttgttatagaaatagcttatacataagcacttatatga 13037791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 4202226 - 4202274
Alignment:
Q  154 gtttatcctttgttatagaaatagctcatacgtaagcacttatatgata 202  Q
    ||||||| ||||||||||||||| || |||| |||||||||||||||||    
T  4202226 gtttatcttttgttatagaaataacttatacttaagcacttatatgata 4202274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 155 - 202
Target Start/End: Original strand, 23370396 - 23370443
Alignment:
Q  155 tttatcctttgttatagaaatagctcatacgtaagcacttatatgata 202  Q
    |||||| ||||| |||||||||||| ||||||||| ||||||||||||    
T  23370396 tttatcttttgtaatagaaatagcttatacgtaagtacttatatgata 23370443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 155 - 202
Target Start/End: Original strand, 23373388 - 23373435
Alignment:
Q  155 tttatcctttgttatagaaatagctcatacgtaagcacttatatgata 202  Q
    |||||| |||| ||||||||||||| ||||||||||| ||||||||||    
T  23373388 tttatcttttgatatagaaatagctaatacgtaagcagttatatgata 23373435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 151 - 202
Target Start/End: Original strand, 38651503 - 38651554
Alignment:
Q  151 ttagtttatcctttgttatagaaatagctcatacgtaagcacttatatgata 202  Q
    |||||||||| |||||||||||| ||||| |||| |||||||||| ||||||    
T  38651503 ttagtttatcttttgttatagaattagcttatacataagcacttacatgata 38651554  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 199
Target Start/End: Complemental strand, 41638214 - 41638177
Alignment:
Q  162 tttgttatagaaatagctcatacgtaagcacttatatg 199  Q
    |||||||||||||||||| |||| ||||||||||||||    
T  41638214 tttgttatagaaatagctaatacataagcacttatatg 41638177  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 202
Target Start/End: Complemental strand, 45975905 - 45975865
Alignment:
Q  162 tttgttatagaaatagctcatacgtaagcacttatatgata 202  Q
    |||||||||||||||||| ||  ||||||||||||||||||    
T  45975905 tttgttatagaaatagcttatgtgtaagcacttatatgata 45975865  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 202
Target Start/End: Complemental strand, 29249439 - 29249399
Alignment:
Q  162 tttgttatagaaatagctcatacgtaagcacttatatgata 202  Q
    |||||||||||||||||| |||| |||||||||||||||||    
T  29249439 tttgttatagaaatagctgatacataagcacttatatgata 29249399  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 202
Target Start/End: Original strand, 31668790 - 31668830
Alignment:
Q  162 tttgttatagaaatagctcatacgtaagcacttatatgata 202  Q
    |||||||||||||||||| |||| |||||||||||||||||    
T  31668790 tttgttatagaaatagcttatacataagcacttatatgata 31668830  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 155 - 202
Target Start/End: Original strand, 4247732 - 4247779
Alignment:
Q  155 tttatcctttgttatagaaatagctcatacgtaagcacttatatgata 202  Q
    |||||| |||||||||||||||||| |||| |||||||||| ||||||    
T  4247732 tttatcttttgttatagaaatagcttatacataagcacttacatgata 4247779  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 163 - 202
Target Start/End: Complemental strand, 8010321 - 8010282
Alignment:
Q  163 ttgttatagaaatagctcatacgtaagcacttatatgata 202  Q
    ||||||||||||||||| |||| |||||||||||||||||    
T  8010321 ttgttatagaaatagcttatacctaagcacttatatgata 8010282  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 197
Target Start/End: Complemental strand, 31461650 - 31461608
Alignment:
Q  155 tttatcctttgttatagaaatagctcatacgtaagcacttata 197  Q
    |||||| |||||||||||||||||| |||| ||||||||||||    
T  31461650 tttatcttttgttatagaaatagcttatacataagcacttata 31461608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 2727953 - 2728001
Alignment:
Q  154 gtttatcctttgttatagaaatagctcatacgtaagcacttatatgata 202  Q
    ||||||| ||||||||||||  |||| |||| |||||||||||||||||    
T  2727953 gtttatcttttgttatagaagcagcttatacataagcacttatatgata 2728001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 202
Target Start/End: Original strand, 10452465 - 10452505
Alignment:
Q  162 tttgttatagaaatagctcatacgtaagcacttatatgata 202  Q
    |||||||||||||||||| |||| |||||||| ||||||||    
T  10452465 tttgttatagaaatagcttatacataagcactgatatgata 10452505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 199
Target Start/End: Complemental strand, 33259788 - 33259744
Alignment:
Q  155 tttatcctttgttatagaaatagctcatacgtaagcacttatatg 199  Q
    |||||| ||||||||| |||||||| |||| ||||||||||||||    
T  33259788 tttatcttttgttataaaaatagcttatacataagcacttatatg 33259744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 155 - 202
Target Start/End: Complemental strand, 14482174 - 14482127
Alignment:
Q  155 tttatcctttgttatagaaatagctcatacgtaagcacttatatgata 202  Q
    |||||| |||||||||||||||| | |||| |||||||||||||||||    
T  14482174 tttatcttttgttatagaaatagtttatacataagcacttatatgata 14482127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 200
Target Start/End: Original strand, 8536153 - 8536191
Alignment:
Q  162 tttgttatagaaatagctcatacgtaagcacttatatga 200  Q
    |||||||||||||||||| |||| |||||||||||||||    
T  8536153 tttgttatagaaatagcttatacataagcacttatatga 8536191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 203
Target Start/End: Complemental strand, 5290606 - 5290565
Alignment:
Q  162 tttgttatagaaatagctcatacgtaagcacttatatgatac 203  Q
    |||||||||||||||||| |||| ||||||||| ||||||||    
T  5290606 tttgttatagaaatagcttatacataagcacttgtatgatac 5290565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 202
Target Start/End: Complemental strand, 8629074 - 8629034
Alignment:
Q  162 tttgttatagaaatagctcatacgtaagcacttatatgata 202  Q
    |||||||||||||||||| |||  |||||||||||||||||    
T  8629074 tttgttatagaaatagcttataaataagcacttatatgata 8629034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 208
Target Start/End: Complemental strand, 12972819 - 12972775
Alignment:
Q  164 tgttatagaaatagctcatacgtaagcacttatatgatacatgct 208  Q
    |||||| ||||||||| |||| ||||||||||||||||| |||||    
T  12972819 tgttattgaaatagcttatacataagcacttatatgataaatgct 12972775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 155 - 202
Target Start/End: Complemental strand, 7244674 - 7244627
Alignment:
Q  155 tttatcctttgttatagaaatagctcatacgtaagcacttatatgata 202  Q
    |||||| |||| ||||||||||||| |||| |||||||||||||||||    
T  7244674 tttatcttttgatatagaaatagcttatacataagcacttatatgata 7244627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 155 - 198
Target Start/End: Original strand, 27481392 - 27481435
Alignment:
Q  155 tttatcctttgttatagaaatagctcatacgtaagcacttatat 198  Q
    ||||||||||||||||||||||||| |||| ||| |||||||||    
T  27481392 tttatcctttgttatagaaatagcttatacataaacacttatat 27481435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 201
Target Start/End: Complemental strand, 24973916 - 24973870
Alignment:
Q  155 tttatcctttgttatagaaatagctcatacgtaagcacttatatgat 201  Q
    |||||| ||||||||||||||||||  ||| ||||||||||||||||    
T  24973916 tttatcttttgttatagaaatagcttttacataagcacttatatgat 24973870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 201
Target Start/End: Complemental strand, 33894595 - 33894549
Alignment:
Q  155 tttatcctttgttatagaaatagctcatacgtaagcacttatatgat 201  Q
    |||||| |||||||||||||||||| |||| |||||||||| |||||    
T  33894595 tttatcttttgttatagaaatagcttatacataagcacttacatgat 33894549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 200
Target Start/End: Original strand, 3610838 - 3610883
Alignment:
Q  155 tttatcctttgttatagaaatagctcatacgtaagcacttatatga 200  Q
    |||||| |||||| ||||||||||| |||| |||||||||||||||    
T  3610838 tttatcttttgttgtagaaatagcttatacataagcacttatatga 3610883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 202
Target Start/End: Complemental strand, 992035 - 991995
Alignment:
Q  162 tttgttatagaaatagctcatacgtaagcacttatatgata 202  Q
    ||||||||||||| | || ||||||||||||||||||||||    
T  992035 tttgttatagaaacaacttatacgtaagcacttatatgata 991995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 202
Target Start/End: Complemental strand, 45078258 - 45078218
Alignment:
Q  162 tttgttatagaaatagctcatacgtaagcacttatatgata 202  Q
    ||||||||| |||||||| |||| |||||||||||||||||    
T  45078258 tttgttataaaaatagcttatacataagcacttatatgata 45078218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 202
Target Start/End: Complemental strand, 46213768 - 46213728
Alignment:
Q  162 tttgttatagaaatagctcatacgtaagcacttatatgata 202  Q
    ||||||||||||||||||  ||| |||||||||||||||||    
T  46213768 tttgttatagaaatagcttttacataagcacttatatgata 46213728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 155 - 202
Target Start/End: Complemental strand, 10190251 - 10190204
Alignment:
Q  155 tttatcctttgttatagaaatagctcatacgtaagcacttatatgata 202  Q
    |||||||||||||||| |||||| | |||| |||||||||||||||||    
T  10190251 tttatcctttgttataaaaatagtttatacataagcacttatatgata 10190204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 193
Target Start/End: Complemental strand, 32848882 - 32848844
Alignment:
Q  155 tttatcctttgttatagaaatagctcatacgtaagcact 193  Q
    |||||| |||||||||||||||||| |||||||||||||    
T  32848882 tttatcttttgttatagaaatagctaatacgtaagcact 32848844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 196
Target Start/End: Complemental strand, 914053 - 914012
Alignment:
Q  155 tttatcctttgttatagaaatagctcatacgtaagcacttat 196  Q
    |||||| |||||||||||||||| ||||||||||| ||||||    
T  914053 tttatcttttgttatagaaatagttcatacgtaagtacttat 914012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 202
Target Start/End: Original strand, 33197339 - 33197384
Alignment:
Q  157 tatcctttgttatagaaatagctcatacgtaagcacttatatgata 202  Q
    |||| |||||||||||||||||| |||  |||||||||||||||||    
T  33197339 tatcttttgttatagaaatagcttatagataagcacttatatgata 33197384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 202
Target Start/End: Original strand, 33267621 - 33267661
Alignment:
Q  162 tttgttatagaaatagctcatacgtaagcacttatatgata 202  Q
    |||||||||||||||| | |||| |||||||||||||||||    
T  33267621 tttgttatagaaatagattatacataagcacttatatgata 33267661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 195
Target Start/End: Original strand, 41033048 - 41033088
Alignment:
Q  155 tttatcctttgttatagaaatagctcatacgtaagcactta 195  Q
    |||||| |||||||||||||||||| |||| ||||||||||    
T  41033048 tttatcttttgttatagaaatagcttatacataagcactta 41033088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0654 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0654
Description:

Target: scaffold0654; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 202
Target Start/End: Original strand, 6733 - 6782
Alignment:
Q  153 agtttatcctttgttatagaaatagctcatacgtaagcacttatatgata 202  Q
    |||||||  |||||||||||||||| | |||| |||||||||||||||||    
T  6733 agtttattttttgttatagaaatagtttatacataagcacttatatgata 6782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 202
Target Start/End: Original strand, 116652 - 116701
Alignment:
Q  153 agtttatcctttgttatagaaatagctcatacgtaagcacttatatgata 202  Q
    |||||||  |||||||||||||||| | |||| |||||||||||||||||    
T  116652 agtttattttttgttatagaaatagtttatacataagcacttatatgata 116701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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