View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10888_3 (Length: 651)
Name: NF10888_3
Description: NF10888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10888_3 |
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Alignment Details
Target: chr1 (Bit Score: 542; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 542; E-Value: 0
Query Start/End: Original strand, 14 - 624
Target Start/End: Complemental strand, 29104586 - 29103988
Alignment:
| Q |
14 |
aataagatggactgggaagttcttgagatgaaaatcaacagttggttagaagcggttaagatctcagtgaggacgctcttcgccggagagaggaacctct |
113 |
Q |
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| T |
29104586 |
aataagatggactgggaagttcttgagatgaaaatcaacagttggttagaggcggttaagatctcagtgaggacgctcttcgccggagagaggaacctct |
29104487 |
T |
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| Q |
114 |
gcgatcgaatcttcgcttcgaattccatcaataattccatcaaagaagcttgttttgctgagatttctaagaatggagctattttgcttttcagatttcc |
213 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||| |
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| T |
29104486 |
gcgatcgaatcttcgcttcgaattccatcaa------------agaagcttgttttgctgagatttctaaggatggagctattttacttttaagatttcc |
29104399 |
T |
|
| Q |
214 |
tgaagtcgttgcaaaaacaaagaaatcaaagccggagaagatttttcgattgcttgatatgtacgctacaatcaccgtgttgttgccggagattgaatca |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29104398 |
tgaagtcgttgcaaaaacaaagaaatcaaagccggagaagatttttcgcttgcttgatatgtacgctacaatcaccgtgttgttgccggagattgaatca |
29104299 |
T |
|
| Q |
314 |
attttctcgtttaattcaatagcagtcgttaaatctcaagcatataattcgcaacatcgattaatcgagtgtgtacgaaatcttcttttggaatttgagt |
413 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29104298 |
attttctcgtttaattcaacagcagtcgttaaatctcaagcatataattcgcaacatcgattaatcgagtgtgtacgaaatcttcttttggaatttgagt |
29104199 |
T |
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| Q |
414 |
ctacaatattgaaggattcttccaaatcagcggcaaatttcggcggagttcattccctgacaaaggaaacaatgcagtatctcattactcttgcagatta |
513 |
Q |
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| T |
29104198 |
ctacaatattgaaggattcttccaaatcagcggcaaatttcggcggagttcattccctgacagaggaaacaatgcagtatctcattactcttgcagatta |
29104099 |
T |
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| Q |
514 |
cagcaacgtgctctctgagatattctttgacattcctcctctgtcgaagtcaccgttgccagaatcttacttatacagtccagaatcatcaaacaatact |
613 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29104098 |
cagcaacgtgctctctgagatattctttgacattcctcctctgtcgaagtcaccgttgccagaatcttacttatacagtccagaatcatcaaacaatact |
29103999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 14 - 603
Target Start/End: Complemental strand, 29090325 - 29089748
Alignment:
| Q |
14 |
aataagatggactgggaagttcttgagatgaaaatcaacagttggttagaagcggttaagatctcagtgaggacgctcttcgccggagagaggaacctct |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||| || ||||||||||||||||| || ||||| | |||||||| ||||||| |
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| T |
29090325 |
aataagatggactgggaagttcttgagatgaaaatcaactgttggttagaggcagttaagatctcagtgagaacactcttttctggagagagaaacctct |
29090226 |
T |
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| Q |
114 |
gcgatcgaatcttcgcttcgaattccatcaataattccatcaaagaagcttgttttgctgagatttctaaga-atggagctattttgcttttcagatttc |
212 |
Q |
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|||| ||||| ||||||||||||||| |||| |||||||||||||| ||| ||||| |||| ||||||||| | | || || |||||| |
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| T |
29090225 |
gcgaacgaattttcgcttcgaattcc------------atcagagaagcttgttttggtgaaatttc-aagagatggagctactcttctcttacgatttc |
29090139 |
T |
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| Q |
213 |
ctgaagtcgttgcaaaaacaaagaaatcaaagccggagaagatttttcgattgcttgatatgtacgctacaatcaccgtgttgttgccggagattgaatc |
312 |
Q |
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||||| ||||||| ||||||||||||| | |||||||||||||| || |||||||||||||| || ||||||||| ||||||| |||||| ||||||| |
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| T |
29090138 |
ctgaattcgttgcgaaaacaaagaaatggacaccggagaagattttccgtttgcttgatatgtatgccacaatcaccatgttgttaccggaggttgaatc |
29090039 |
T |
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| Q |
313 |
aattttctcgtttaattcaatagcagtcgttaaatctcaagcatataattcgcaacatcgattaatcgagtgtgtacgaaatcttcttttggaatttgag |
412 |
Q |
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|||||||| || ||||||| | | ||||||||||||||||||||||| ||||| || | | || | |||| ||||| || | | ||||| ||| |
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| T |
29090038 |
gattttctctttcaattcaacctctggtgttaaatctcaagcatataattcacaacaaagactcgttgaatctgtaagaaatattttctcagaattcgag |
29089939 |
T |
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| Q |
413 |
tctacaatattgaaggattcttccaaatcagcggcaaatttcggcggagttcattccctgacaaaggaaacaatgcagtatctcattactcttgcagatt |
512 |
Q |
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|| |||| ||||||| ||||||||||| ||| ||||||||||| |||||||||| |||| | |||||||||| ||||| | | ||| |||||| |
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| T |
29089938 |
tccgcaatcctgaaggactcttccaaatcgctggcgaatttcggcggtattcattcccttacaacgcaaacaatgcaatatcttaccaagcttacagatt |
29089839 |
T |
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| Q |
513 |
acagcaacgtgctctctgagatattctttgacattcctcctctgtcgaagtcaccgttgccagaatcttacttatacagtccagaatcatc |
603 |
Q |
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||||||||||||| ||||| |||||||| ||||||||||| || ||| || || ||||||||||||||||||||||||||||||||||| |
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| T |
29089838 |
acagcaacgtgctttctgaaatattcttcgacattcctccgtcgttgaattccccattgccagaatcttacttatacagtccagaatcatc |
29089748 |
T |
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