View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10888_4 (Length: 588)
Name: NF10888_4
Description: NF10888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10888_4 |
 | |
|
| [»] scaffold0352 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 34 - 561
Target Start/End: Original strand, 36357135 - 36357650
Alignment:
| Q |
34 |
ttgaatcatttcaacgagacaattttattgttatttaagatttgtgtcatttatatannnnnnnnctacttat----tgtgacatccaaaaatagaaaat |
129 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||| |
|
|
| T |
36357135 |
ttgaatcatttcaatgagacaattttattgttatttaagatttgtgtcatttatatattttttt-ctacttatatattgtgacatccaaaaaaagaaaat |
36357233 |
T |
|
| Q |
130 |
tgtgacaccaatttaaattgacgaaggaaatgatggacaaatacaaagtttgagaattatgattatctcgagagagagttacattaattatgtgtgatgt |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
36357234 |
tgtgacaccaatttaaattgacgaaggaaatgatggacaaatacaaagtttgagaattatgattatctcgaga--gagttacattaattatgtgtgatgt |
36357331 |
T |
|
| Q |
230 |
aataacatcaatcttataaatactaataatattatttcatggtaagactataaggtcattcattattttatatttcttacaatattaagtattgtgttag |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36357332 |
aataacatcaatcttataaatactaataatattatttcatggtaagactataaggtcattcattattttatatttcttacaatattaagtattgtgttag |
36357431 |
T |
|
| Q |
330 |
catgtatagatcataaatgtatttgcgtcaaatttttcatggaggttttccccacgcttgacttgtttcctcaattgtctttctcttttccaccacctcc |
429 |
Q |
| |
|
|||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36357432 |
catgtata---------------tgcgtctaatttttcatggaggttttccccacgcttgacttgtttcctcaattgtctttctcttttccaccacctcc |
36357516 |
T |
|
| Q |
430 |
catctttctaccaatgagaaaacctatgctactccactca--ttccccgtttcctttcctttttgcatttttgagaaattttacaaaatttccactacga |
527 |
Q |
| |
|
|||||||||||||||||||||||||||| | | | ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36357517 |
catctttctaccaatgagaaaacctatgttgtttccatcactttccccctttcctttcctttttgcatttttgagaaattttacaaaatttccactacga |
36357616 |
T |
|
| Q |
528 |
ccgccaccatcgggataggttttatcgtttccac |
561 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
36357617 |
ccgccaccatcgggataggttttatcgtttccac |
36357650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 33 - 89
Target Start/End: Complemental strand, 39659685 - 39659629
Alignment:
| Q |
33 |
gttgaatcatttcaacgagacaattttattgttatttaagatttgtgtcatttatat |
89 |
Q |
| |
|
|||||||||||||||| |||||||||||| || |||| ||||| |||||||||||| |
|
|
| T |
39659685 |
gttgaatcatttcaacttgacaattttatttttgtttaggatttctgtcatttatat |
39659629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0352 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0352
Description:
Target: scaffold0352; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 89
Target Start/End: Complemental strand, 2592 - 2536
Alignment:
| Q |
33 |
gttgaatcatttcaacgagacaattttattgttatttaagatttgtgtcatttatat |
89 |
Q |
| |
|
||||||| ||||||||||| ||||||| || ||||||| ||||| ||||||||||| |
|
|
| T |
2592 |
gttgaattatttcaacgaggcaattttgttattatttaggatttcagtcatttatat |
2536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University