View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10888_5 (Length: 554)
Name: NF10888_5
Description: NF10888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10888_5 |
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Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 298 - 540
Target Start/End: Original strand, 36659348 - 36659588
Alignment:
| Q |
298 |
atctcacctttcatgcttctcgcaagctcctcaattttcccattttgtcccttaagcgatataaacatcataccacgtgggtgtcgatcctccatgtacc |
397 |
Q |
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| T |
36659348 |
atctcacctttcatgcttctcgcaagctcctcaattttcccattttgtcccttaagcgatgtaaacatca--ccacgtgggtgtcgatcctccatgtacc |
36659445 |
T |
|
| Q |
398 |
cttcctcaaaatccttggccccaagatcctgcaagtgctagaatattcatgggtgcatcaatataatatatatcaatcaataaacaacgcagaatatgat |
497 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36659446 |
cttcctcaaaatccttggccccaagatcctgcaagtgctagaatattcatgggtgcatcaatataatatatatcaatcaataaacaacgcagaatatgat |
36659545 |
T |
|
| Q |
498 |
atttttaacaattacataaataacttgtttcacctgaagtagt |
540 |
Q |
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| T |
36659546 |
atttttaacaattacataaataacttgtttcgcctgaagtagt |
36659588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 135 - 236
Target Start/End: Original strand, 36659183 - 36659285
Alignment:
| Q |
135 |
ttttgggcttttgatttaaagcnnnnnnn-tgaagaaacttctcacacctgaaaattagtttggacgtacacaactaataaatatttaaattttgtatcc |
233 |
Q |
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| T |
36659183 |
ttttgggcttttgatttaaagcaaaaaaaatgaagaaacttttcacacctgaaaattagtttggacgtacacaactaataaatatttaaattttgtatcc |
36659282 |
T |
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| Q |
234 |
ttt |
236 |
Q |
| |
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||| |
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| T |
36659283 |
ttt |
36659285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 36658452 - 36658511
Alignment:
| Q |
1 |
gaaatttgctcggaatatgtgtggcgaaaaatcaatggttgacttgttcataagagatga |
60 |
Q |
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| T |
36658452 |
gaaatttgctcggaatatgtgtggcgaaaaatcaatggttgacttgttcataagagatga |
36658511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 347 - 422
Target Start/End: Original strand, 32079295 - 32079370
Alignment:
| Q |
347 |
ccttaagcgatataaacatcataccacgtgggtgtcgatcctccatgtacccttcctcaaaatccttggccccaag |
422 |
Q |
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| T |
32079295 |
ccttaagcggtgtaaacatcctaacacgtgagtgtcgatcctccatgtacccttactcaaaatccttggtcccaag |
32079370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 346 - 421
Target Start/End: Complemental strand, 22719155 - 22719080
Alignment:
| Q |
346 |
cccttaagcgatataaacatcataccacgtgggtgtcgatcctccatgtacccttcctcaaaatccttggccccaa |
421 |
Q |
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|||||||| ||| ||||||| || |||| |||||||||| ||||||||| |||||||||||||||||||| |||| |
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| T |
22719155 |
cccttaagagatgtaaacatgttagcacgcgggtgtcgattctccatgtatccttcctcaaaatccttggctccaa |
22719080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 13032596 - 13032644
Alignment:
| Q |
1 |
gaaatttgctcggaatatgtgtggcgaaaaatcaatggttgacttgttc |
49 |
Q |
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|||||||||| ||||||||||||| ||||||| |||||||||||||||| |
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| T |
13032596 |
gaaatttgcttggaatatgtgtggtgaaaaattaatggttgacttgttc |
13032644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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