View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10888_6 (Length: 524)
Name: NF10888_6
Description: NF10888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10888_6 |
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Alignment Details
Target: chr1 (Bit Score: 436; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 33 - 499
Target Start/End: Complemental strand, 8535508 - 8535041
Alignment:
| Q |
33 |
tcctaccgtccactccatgcatgtcattggaccagttctgcaacagtcaaaatgcacgtttatgttctgtatttttt-gttttctctgcctttttaaaag |
131 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
8535508 |
tcctaccgtccactgcatgcatgtcattggaccagttctgcaacagtcaaagtgcacgtttatgttctgtatttttttgttttctctgcctttttaaaag |
8535409 |
T |
|
| Q |
132 |
tgaatcattattatttgtttggacgaatgaggttggagtcaaaagagaaaaagttcacatgtgagtgaataaatgatgatattggacggtacaaataaca |
231 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8535408 |
tgaatcattattatttgtttggacgaatgaggttggagtcaaaagagaaaaagttcacatgtgagtgaataaatgatgatattggacggtacaaataaca |
8535309 |
T |
|
| Q |
232 |
catttagctacactagcatatcagtttgatactacacaaaacaagattaagattaagatggaggtaaacggtgagaatagggatagcagaagagtgatcg |
331 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8535308 |
catttagctacactagcatatcagtttgatactacacaaaacaagattaagattaagatggaggtaaacggtgagaatagggatagcagaagagtgatcg |
8535209 |
T |
|
| Q |
332 |
atccaagaagtgggttttgcagcagcaattcaatcttctacagcaagagaaaaccccttcaacttccacctaaccactctttagatgccaccactttcat |
431 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
8535208 |
atccaagaagtgggttttgcagcagcaattcaatcttctacagcaagagaaagccccttccacttccacctaaccactctttagatgccaccactttcat |
8535109 |
T |
|
| Q |
432 |
ctcctcccgcgctcatcacggccacatcgccttcattgacgcctccaccggccaccaattcacctacc |
499 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
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| T |
8535108 |
ctcctcccgcgctcatcacggccatatcgccttcattgacgcctccaccggccaccaattcacttacc |
8535041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 33 - 499
Target Start/End: Complemental strand, 8600747 - 8600280
Alignment:
| Q |
33 |
tcctaccgtccactccatgcatgtcattggaccagttctgcaacagtcaaaatgcacgtttatgttctgtatttttt-gttttctctgcctttttaaaag |
131 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
8600747 |
tcctaccgtccactgcatgcatgtcattggaccagttctgcaacagtcaaagtgcacgtttatgttctgtatttttttgttttctctgcctttttaaaag |
8600648 |
T |
|
| Q |
132 |
tgaatcattattatttgtttggacgaatgaggttggagtcaaaagagaaaaagttcacatgtgagtgaataaatgatgatattggacggtacaaataaca |
231 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8600647 |
tgaatcattattatttgtttggacgaatgaggttggagtcaaaagagaaaaagttcacatgtgagtgaataaatgatgatattggacggtacaaataaca |
8600548 |
T |
|
| Q |
232 |
catttagctacactagcatatcagtttgatactacacaaaacaagattaagattaagatggaggtaaacggtgagaatagggatagcagaagagtgatcg |
331 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8600547 |
catttagctacactagcatatcagtttgatactacacaaaacaagattaagattaagatggaggtaaacggtgagaatagggatagcagaagagtgatcg |
8600448 |
T |
|
| Q |
332 |
atccaagaagtgggttttgcagcagcaattcaatcttctacagcaagagaaaaccccttcaacttccacctaaccactctttagatgccaccactttcat |
431 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8600447 |
atccaagaagtgggttttgcagcagcaattcaatcttctacagcaagagaaagccccttccacttccacctaaccactctttagatgccaccactttcat |
8600348 |
T |
|
| Q |
432 |
ctcctcccgcgctcatcacggccacatcgccttcattgacgcctccaccggccaccaattcacctacc |
499 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
8600347 |
ctcctcccgcgctcatcacggccatatcgccttcattgacgcctccaccggccaccaattcacttacc |
8600280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 164 - 499
Target Start/End: Original strand, 8547572 - 8547907
Alignment:
| Q |
164 |
ttggagtcaaaagagaaaaagttcacatgtgagtgaataaatgatgatattggacggtacaaataacacatttagctacactagcatatcagtttgatac |
263 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8547572 |
ttggagtcaaaagagaaaaagttcacatgtgagtgaataaatgatgatattggacggtacaaataacacatttagctacactagcatatcagtttgatac |
8547671 |
T |
|
| Q |
264 |
tacacaaaacaagattaagattaagatggaggtaaacggtgagaatagggatagcagaagagtgatcgatccaagaagtgggttttgcagcagcaattca |
363 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8547672 |
tacacaaaacaagattaagattaagatggaggtaaacggtgagaatagggatagcagaagagtgatcgatccaagaagtgggttttgcagcagcaattca |
8547771 |
T |
|
| Q |
364 |
atcttctacagcaagagaaaaccccttcaacttccacctaaccactctttagatgccaccactttcatctcctcccgcgctcatcacggccacatcgcct |
463 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
8547772 |
atcttctacagcaagagaaagccccttccacttccacctaaccactctttagatgccaccactttcatctcctcccgcgctcatcacggccatatcgcct |
8547871 |
T |
|
| Q |
464 |
tcattgacgcctccaccggccaccaattcacctacc |
499 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| |
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| T |
8547872 |
tcattgacgcctccaccggccaccaattcacttacc |
8547907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 164 - 499
Target Start/End: Original strand, 8612811 - 8613146
Alignment:
| Q |
164 |
ttggagtcaaaagagaaaaagttcacatgtgagtgaataaatgatgatattggacggtacaaataacacatttagctacactagcatatcagtttgatac |
263 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8612811 |
ttggagtcaaaagagaaaaagttcacatgtgagtgaataaatgatgatattggacggtacaaataacacatttagctacactagcatatcagtttgatac |
8612910 |
T |
|
| Q |
264 |
tacacaaaacaagattaagattaagatggaggtaaacggtgagaatagggatagcagaagagtgatcgatccaagaagtgggttttgcagcagcaattca |
363 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8612911 |
tacacaaaacaagattaagattaagatggaggtaaacggtgagaatagggatagcagaagagtgatcgatccaagaagtgggttttgcagcagcaattca |
8613010 |
T |
|
| Q |
364 |
atcttctacagcaagagaaaaccccttcaacttccacctaaccactctttagatgccaccactttcatctcctcccgcgctcatcacggccacatcgcct |
463 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
8613011 |
atcttctacagcaagagaaagccccttccacttccacctaaccactctttagatgccaccactttcatctcctcccgcgctcatcacggccatatcgcct |
8613110 |
T |
|
| Q |
464 |
tcattgacgcctccaccggccaccaattcacctacc |
499 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| |
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|
| T |
8613111 |
tcattgacgcctccaccggccaccaattcacttacc |
8613146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 84; Significance: 1e-39; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 332 - 499
Target Start/End: Complemental strand, 14752879 - 14752712
Alignment:
| Q |
332 |
atccaagaagtgggttttgcagcagcaattcaatcttctacagcaagagaaaaccccttcaacttccacctaaccactctttagatgccaccactttcat |
431 |
Q |
| |
|
|||||| |||||||||||| ||| |||||||||||||||||||||||| |||||||| | |||||| || || || || |||||||||||||| || || |
|
|
| T |
14752879 |
atccaacaagtgggttttgtagctccaattcaatcttctacagcaagaggaaacccctcctacttcctccaaatcagtccttagatgccaccacctttat |
14752780 |
T |
|
| Q |
432 |
ctcctcccgcgctcatcacggccacatcgccttcattgacgcctccaccggccaccaattcacctacc |
499 |
Q |
| |
|
|||||||||||| ||||||||||||| || ||||| |||||||||||||||||||| || ||||||| |
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|
| T |
14752779 |
ctcctcccgcgcccatcacggccacactgctttcatcgacgcctccaccggccaccactttacctacc |
14752712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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