View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10888_7 (Length: 436)

Name: NF10888_7
Description: NF10888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10888_7
NF10888_7
[»] chr1 (6 HSPs)
chr1 (210-301)||(32876764-32876855)
chr1 (211-290)||(11800831-11800908)
chr1 (264-346)||(7352098-7352180)
chr1 (122-199)||(7644038-7644114)
chr1 (263-347)||(7644183-7644266)
chr1 (309-349)||(32876814-32876854)
[»] chr6 (3 HSPs)
chr6 (230-422)||(24634119-24634311)
chr6 (259-349)||(24634094-24634184)
chr6 (147-207)||(16990751-16990811)
[»] chr5 (3 HSPs)
chr5 (121-286)||(22875947-22876112)
chr5 (225-286)||(31678835-31678896)
chr5 (293-346)||(28297997-28298050)
[»] chr2 (3 HSPs)
chr2 (259-337)||(32225895-32225973)
chr2 (249-290)||(25057109-25057150)
chr2 (263-294)||(14199862-14199893)
[»] chr4 (3 HSPs)
chr4 (230-341)||(28313154-28313265)
chr4 (121-198)||(25242806-25242883)
chr4 (142-198)||(24826153-24826209)
[»] chr7 (2 HSPs)
chr7 (249-347)||(18855060-18855158)
chr7 (147-198)||(12599801-12599852)
[»] chr8 (5 HSPs)
chr8 (259-347)||(24526437-24526525)
chr8 (180-240)||(26567924-26567984)
chr8 (263-347)||(26568170-26568254)
chr8 (370-418)||(24526513-24526561)
chr8 (263-347)||(26568022-26568106)
[»] chr3 (1 HSPs)
chr3 (147-207)||(14513596-14513656)


Alignment Details
Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 210 - 301
Target Start/End: Original strand, 32876764 - 32876855
Alignment:
Q  210 cgaccataccaagtaacttgtaatattttactggaccgactagcaagatctcactcaacactagtttgattgttcaagtcatgtcagctcag 301  Q
    ||||||||||| || ||||||||||  ||||| ||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||    
T  32876764 cgaccataccatgtgacttgtaataccttacttgaccgactagcaagatctcactcaacactggtttgattgttcaagtcaggccagctcag 32876855  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 211 - 290
Target Start/End: Original strand, 11800831 - 11800908
Alignment:
Q  211 gaccataccaagtaacttgtaatattttactggaccgactagcaagatctcactcaacactagtttgattgttcaagtca 290  Q
    |||||| ||| || |||||||||| ||||||  ||| |||||||||||||||||||||| | |||||| |||||||||||    
T  11800831 gaccattccatgtgacttgtaatactttact--accaactagcaagatctcactcaacattggtttgactgttcaagtca 11800908  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 264 - 346
Target Start/End: Complemental strand, 7352180 - 7352098
Alignment:
Q  264 tcaacactagtttgattgttcaagtcatgtcagctcagtctgtcttcactcatcactggtttgattgttgaagtcatgccagc 346  Q
    |||||| | |||||||||||||||||| | |||||||||  ||||||| ||| |||||||||||  ||| |||||| ||||||    
T  7352180 tcaacattggtttgattgttcaagtcaggccagctcagttcgtcttcaatcaacactggtttgacagttcaagtcaggccagc 7352098  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 199
Target Start/End: Original strand, 7644038 - 7644114
Alignment:
Q  122 tgtggactagtatcggttgaccgaataaagaacaaatgtatatgctttaacaggctcgacgcttggtgaactgtggat 199  Q
    |||||||| |||| ||| |||||||||||||||||| || || || |||||| ||| ||||||||||| ||| |||||    
T  7644038 tgtggact-gtataggtcgaccgaataaagaacaaacgtctacgccttaacatgcttgacgcttggtggactatggat 7644114  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 347
Target Start/End: Original strand, 7644183 - 7644266
Alignment:
Q  263 ctcaacactagtttgattgttcaagtcatgtcagctcagtctgtcttcactcatcactggtttgattgttgaagtcatgccagct 347  Q
    |||| ||||||||||| |||| |||||||||||||||||   |||| |||||| |||| | |||| |||| ||||||||| ||||    
T  7644183 ctcagcactagtttgactgtttaagtcatgtcagctcagctcgtctccactcagcactag-ttgactgttcaagtcatgcgagct 7644266  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 349
Target Start/End: Original strand, 32876814 - 32876854
Alignment:
Q  309 tcactcatcactggtttgattgttgaagtcatgccagctca 349  Q
    ||||||| |||||||||||||||| |||||| |||||||||    
T  32876814 tcactcaacactggtttgattgttcaagtcaggccagctca 32876854  T

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Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 230 - 422
Target Start/End: Complemental strand, 24634311 - 24634119
Alignment:
Q  230 taatattttactggaccgactagcaagatctcactcaacactagtttgattgttcaagtcatgtcagctcagtctgtcttcactcatcactggtttgatt 329  Q
    |||||||||||| ||||||||||  | | |||||| |||||| |||||| ||||||||||||| || |||||   ||| ||||||| |||| |||||| |    
T  24634311 taatattttacttgaccgactagagaaacctcacttaacactggtttgaatgttcaagtcatgccatctcagctcgtcctcactcaacactcgtttgact 24634212  T
Q  330 gttgaagtcatgccagctcaaaccgtcttcacccataactggtttgaatgttcaaatcataccagcttagctcgtcttcactcaacacaggtt 422  Q
    ||| |||||| |||| ||||||||||| |||| ||  | |||||||| | ||||| |||| |||||| || | ||| ||||||||||| ||||    
T  24634211 gttcaagtcacgccaactcaaaccgtcctcactcaacattggtttgattattcaattcatgccagctcagttggtcctcactcaacactggtt 24634119  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 259 - 349
Target Start/End: Complemental strand, 24634184 - 24634094
Alignment:
Q  259 ctcactcaacactagtttgattgttcaagtcatgtcagctcagtctgtcttcactcatcactggtttgattgttgaagtcatgccagctca 349  Q
    ||||||||||| | |||||||| ||||| ||||| |||||||||  ||| ||||||| ||||||||||| |||| | ||||||||||||||    
T  24634184 ctcactcaacattggtttgattattcaattcatgccagctcagttggtcctcactcaacactggtttgactgttcaggtcatgccagctca 24634094  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 147 - 207
Target Start/End: Complemental strand, 16990811 - 16990751
Alignment:
Q  147 taaagaacaaatgtatatgctttaacaggctcgacgcttggtgaactgtggattaacatgg 207  Q
    |||||||||||||| || ||||||||||||| ||||||||||| | |||||| ||||||||    
T  16990811 taaagaacaaatgtctacgctttaacaggcttgacgcttggtggattgtggactaacatgg 16990751  T

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Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 121 - 286
Target Start/End: Original strand, 22875947 - 22876112
Alignment:
Q  121 ttgtggactagtatcggttgaccgaataaagaacaaatgtatatgctttaacaggctcgacgcttggtgaactgtggattaacatggaccgaccatacca 220  Q
    ||||||||| |||| ||||||||  |||||||||||| || || || ||||| | || ||||||||||| || || || |  ||||||| ||||||||||    
T  22875947 ttgtggactggtattggttgaccagataaagaacaaacgtttacgccttaactgacttgacgcttggtggaccgtagactggcatggacggaccatacca 22876046  T
Q  221 agtaacttgtaatattttactggaccgactagcaagatctcactcaacactagtttgattgttcaa 286  Q
     || |||||||||| || ||| ||||||| | |||||||||||| |||||| | |||| |||||||    
T  22876047 tgtgacttgtaatagttgacttgaccgaccaacaagatctcacttaacactgggttgactgttcaa 22876112  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 225 - 286
Target Start/End: Original strand, 31678835 - 31678896
Alignment:
Q  225 acttgtaatattttactggaccgactagcaagatctcactcaacactagtttgattgttcaa 286  Q
    |||||||||||||| ||||||  |||| |||||||||||||||||| ||||||| |||||||    
T  31678835 acttgtaatattttgctggactaactatcaagatctcactcaacacgagtttgactgttcaa 31678896  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 346
Target Start/End: Complemental strand, 28298050 - 28297997
Alignment:
Q  293 tcagctcagtctgtcttcactcatcactggtttgattgttgaagtcatgccagc 346  Q
    |||||||||  |||||||| ||| |||||||||||||||| |||||| ||||||    
T  28298050 tcagctcagcatgtcttcagtcaacactggtttgattgttcaagtcaagccagc 28297997  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 259 - 337
Target Start/End: Original strand, 32225895 - 32225973
Alignment:
Q  259 ctcactcaacactagtttgattgttcaagtcatgtcagctcagtctgtcttcactcatcactggtttgattgttgaagt 337  Q
    |||||||||||||||||||| ||||||||||||||||| |||||  ||| ||||||| ||||| ||||| |||| ||||    
T  32225895 ctcactcaacactagtttgactgttcaagtcatgtcagttcagttcgtcctcactcaacactgatttgactgttcaagt 32225973  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 249 - 290
Target Start/End: Complemental strand, 25057150 - 25057109
Alignment:
Q  249 ctagcaagatctcactcaacactagtttgattgttcaagtca 290  Q
    ||||||||||||||||||||||||| |||| |||||||||||    
T  25057150 ctagcaagatctcactcaacactagcttgactgttcaagtca 25057109  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 263 - 294
Target Start/End: Complemental strand, 14199893 - 14199862
Alignment:
Q  263 ctcaacactagtttgattgttcaagtcatgtc 294  Q
    ||||||||||||||||||||||||||||||||    
T  14199893 ctcaacactagtttgattgttcaagtcatgtc 14199862  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 230 - 341
Target Start/End: Original strand, 28313154 - 28313265
Alignment:
Q  230 taatattttactggaccgactagcaagatctcactcaacactagtttgattgttcaagtcatgtcagctcagtctgtcttcactcatcactggtttgatt 329  Q
    |||||||| ||| |||| |||||||||||||||||||||| |  ||||||||||| ||| |||  |||||||   ||| ||| ||| |||||||||||||    
T  28313154 taatatttgacttgaccaactagcaagatctcactcaacattgttttgattgttcgagtaatgctagctcagctcgtcctcattcaacactggtttgatt 28313253  T
Q  330 gttgaagtcatg 341  Q
    ||| ||| ||||    
T  28313254 gttcaagccatg 28313265  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 198
Target Start/End: Original strand, 25242806 - 25242883
Alignment:
Q  121 ttgtggactagtatcggttgaccgaataaagaacaaatgtatatgctttaacaggctcgacgcttggtgaactgtgga 198  Q
    ||||||||  |||| ||| |||||  ||||||||||| || || || |||||||||| ||||||||||| ||||||||    
T  25242806 ttgtggaccggtatgggtcgaccgggtaaagaacaaacgtctacgccttaacaggcttgacgcttggtggactgtgga 25242883  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 142 - 198
Target Start/End: Original strand, 24826153 - 24826209
Alignment:
Q  142 ccgaataaagaacaaatgtatatgctttaacaggctcgacgcttggtgaactgtgga 198  Q
    |||| ||||||||||| || || || |||||||||| ||||||||||| ||||||||    
T  24826153 ccgattaaagaacaaacgtctacgccttaacaggctagacgcttggtggactgtgga 24826209  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 249 - 347
Target Start/End: Complemental strand, 18855158 - 18855060
Alignment:
Q  249 ctagcaagatctcactcaacactagtttgattgttcaagtcatgtcagctcagtctgtcttcactcatcactggtttgattgttgaagtcatgccagct 347  Q
    ||||| |||||  |||||||||| |||||| ||||||||||||||||||| ||  |||  ||||||| ||||| ||||| | || ||||||||||||||    
T  18855158 ctagcgagatccaactcaacactggtttgactgttcaagtcatgtcagctaagcttgttctcactcaacactgatttgactctttaagtcatgccagct 18855060  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 147 - 198
Target Start/End: Complemental strand, 12599852 - 12599801
Alignment:
Q  147 taaagaacaaatgtatatgctttaacaggctcgacgcttggtgaactgtgga 198  Q
    ||||||||||| || ||||| |||||||||| ||||||||||| ||||||||    
T  12599852 taaagaacaaacgtctatgccttaacaggcttgacgcttggtggactgtgga 12599801  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 347
Target Start/End: Complemental strand, 24526525 - 24526437
Alignment:
Q  259 ctcactcaacactagtttgattgttcaagtcatgtcagctcagtctgtcttcactcatcactggtttgattgttgaagtcatgccagct 347  Q
    |||||||||||| ||||||| || | ||| ||||  |||||||  |||| ||||||| ||||||||||| |||| |||||||| |||||    
T  24526525 ctcactcaacacaagtttgactgcttaagccatgaaagctcagcttgtcctcactcaacactggtttgactgttcaagtcatgtcagct 24526437  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 240
Target Start/End: Original strand, 26567924 - 26567984
Alignment:
Q  180 acgcttggtgaactgtggattaacatggaccgaccataccaagtaacttgtaatattttac 240  Q
    ||||||||| |||| |||| |  ||||||| |||||||||| |||||||||||||||||||    
T  26567924 acgcttggtaaactatggactggcatggacagaccataccatgtaacttgtaatattttac 26567984  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 347
Target Start/End: Original strand, 26568170 - 26568254
Alignment:
Q  263 ctcaacactagtttgattgttcaagtcatgtcagctcagtctgtcttcactcatcactggtttgattgttgaagtcatgccagct 347  Q
    ||||||||| |||||| |||| |||||||| ||||||||   |||| ||||| |||||| |||||  ||| ||||||||||||||    
T  26568170 ctcaacactggtttgactgtttaagtcatgccagctcagctcgtctccactcgtcactgctttgacagttcaagtcatgccagct 26568254  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 418
Target Start/End: Complemental strand, 24526561 - 24526513
Alignment:
Q  370 ggtttgaatgttcaaatcataccagcttagctcgtcttcactcaacaca 418  Q
    ||||||| ||||||| ||||  |||||||||||||| ||||||||||||    
T  24526561 ggtttgactgttcaagtcatgtcagcttagctcgtcctcactcaacaca 24526513  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 347
Target Start/End: Original strand, 26568022 - 26568106
Alignment:
Q  263 ctcaacactagtttgattgttcaagtcatgtcagctcagtctgtcttcactcatcactggtttgattgttgaagtcatgccagct 347  Q
    |||| ||||| ||||||||||||||||||||||||| ||   |||| | || | |||| |||||| | || ||||||||||||||    
T  26568022 ctcagcactaatttgattgttcaagtcatgtcagcttagctcgtctcctcttagcactagtttgacttttcaagtcatgccagct 26568106  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 147 - 207
Target Start/End: Complemental strand, 14513656 - 14513596
Alignment:
Q  147 taaagaacaaatgtatatgctttaacaggctcgacgcttggtgaactgtggattaacatgg 207  Q
    ||||||||||| || || || |||||||||| ||||||||||| |||||||| || |||||    
T  14513656 taaagaacaaacgtctacgccttaacaggcttgacgcttggtggactgtggactagcatgg 14513596  T

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