View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10888_high_1 (Length: 236)
Name: NF10888_high_1
Description: NF10888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10888_high_1 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 38385614 - 38385849
Alignment:
| Q |
1 |
aatatgcaaaatttacctatgagcattcccaccatgttgataacagcatgagcaaaagaactatcagcattagaatcatgttccacatcgacattgacgc |
100 |
Q |
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| T |
38385614 |
aatatgcaaaatttacctatgagcattcccaccatgttgataacagcatgagcaaaagaactatcagcattagaatcatgttccacgtcgacattgacgc |
38385713 |
T |
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| Q |
101 |
cttctgcagtagtagtgttatttctatcctcagcaatggtgagatcacaattgcagtgtttgttttcctctacgcaaacattgcaatttgccaactgcac |
200 |
Q |
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| T |
38385714 |
cttctgcagtagtagtgttatttctatcctcagcaatggtgtgatcacaattgcagtgtctgttttcctctacgcaaacattgcaatttgccaactgcac |
38385813 |
T |
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| Q |
201 |
aggcaaagcgactatattttcatcatgttcacgcct |
236 |
Q |
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| T |
38385814 |
aggcaaagcgactatattttcatcatgttcacgcct |
38385849 |
T |
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Target: chr4 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 147 - 233
Target Start/End: Original strand, 29438979 - 29439065
Alignment:
| Q |
147 |
acaattgcagtgtttgttttcctctacgcaaacattgcaatttgccaactgcacaggcaaagcgactatattttcatcatgttcacg |
233 |
Q |
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| T |
29438979 |
acaattgcagtgtttgttttcctctacgcaaacattgcaatttgccaactgcacaggcaaagcgactatattttcatcatgttcacg |
29439065 |
T |
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