View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10889_high_1 (Length: 443)
Name: NF10889_high_1
Description: NF10889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10889_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 363; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 18 - 431
Target Start/End: Original strand, 46641448 - 46641859
Alignment:
| Q |
18 |
agaatagctacttgagagaatttgtattgaaggttccatatctgattgataatttatctgtaaaaataaatatattctttcttaagnnnnnnnnnnnnnn |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46641448 |
agaatagctacttgagagaatttgtattgaaggttccatatctgattgataatttatctgtaaaaataaatatattctttcttaagaaaaaaaaaaaa-- |
46641545 |
T |
|
| Q |
118 |
gatttacatgtttttgcaatatttagccaacattgccatcttcaatcaaaaacctttcttcttgttctaaaactgcattcccatgatctgaacaatgacg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46641546 |
gatttacatgtttttgcaatatttagccaacattgccatcttcaatcaaaaacctttcttcttgttctaaaactgcattcccatgatctgaacaatgacg |
46641645 |
T |
|
| Q |
218 |
acgcagcattgtttcacctcttgtatgagccttgccgcaaggattgaaaggatcttagtgtgtgtctctccttttatgtctactttgcacatgcaaaaat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46641646 |
acgcagcattgtttcacctcttgtatgagccttgccgcaaggattgaaaggatcttagtgtgtgtctctccttttatgtctactttgcacatgcaaaaat |
46641745 |
T |
|
| Q |
318 |
tcatttgcaatacattccaatgctctaactgtcagcgatctgtttctagtgctttgtctcctcggatttatatcagcctgtttttccaaagaatcaacat |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
46641746 |
tcatttgcaatacattccaatgctctaactgtcagcgatctgtttctagtgctttgtctcctcagatttatatcagcctgtttttccaaagaatcaacat |
46641845 |
T |
|
| Q |
418 |
cacaaggtgttctc |
431 |
Q |
| |
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|||||||||||||| |
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| T |
46641846 |
cacaaggtgttctc |
46641859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 153 - 424
Target Start/End: Original strand, 46172803 - 46173080
Alignment:
| Q |
153 |
ccatcttcaatcaaaaacctttcttcttgttctaaaactgcattcccatgatctgaacaatgacgacgcagcattgtttcacctcttgtatgagccttgc |
252 |
Q |
| |
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|||||| |||||||| | ||||||||||| || |||||||||||| |||||||||||||||||| |||| ||| || ||| |||| ||||||||| |
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| T |
46172803 |
ccatctccaatcaaatgcttttcttcttgtactgcaactgcattcccgtgatctgaacaatgacgatgcagtgttgatttgccttttgttcgagccttgc |
46172902 |
T |
|
| Q |
253 |
cgcaaggattgaaaggatcttagtgtgt------gtctctccttttatgtctactttgcacatgcaaaaattcatttgcaatacattccaatgctctaac |
346 |
Q |
| |
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||||||||||||| |||||| ||| || |||| || |||| ||| | | || ||||||||| |||||||||| |||||||||||||||||||| |
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| T |
46172903 |
ggcaaggattgaaaagatctttgtgggtctggctgtctttctttttttgtttcttctgtacatgcaaatattcatttgctatacattccaatgctctaac |
46173002 |
T |
|
| Q |
347 |
tgtcagcgatctgtttctagtgctttgtctcctcggatttatatcagcctgtttttccaaagaatcaacatcacaagg |
424 |
Q |
| |
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||||| || ||||||||||||||| |||||||| ||||||||||||| ||||| |||||||||| ||||||||||||| |
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| T |
46173003 |
tgtcaacggtctgtttctagtgctctgtctcctgggatttatatcaggctgttgttccaaagaaccaacatcacaagg |
46173080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 184 - 430
Target Start/End: Complemental strand, 46630949 - 46630697
Alignment:
| Q |
184 |
ctaaaactgcattcccatgatctgaacaatgacgacgcagcattgtttcacctcttgtatgagccttgccgcaaggattgaaaggatcttagtgtgt--- |
280 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||| |||||||||||| |||||| || | |||||| ||||||||||| | |||||| || || |
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| T |
46630949 |
ctaaaactgcagtaccatgatctgaacaatgacgaggcagcattgttttgcctcttttacaatccttgcagcaaggattgagatgatcttgttgcgtctg |
46630850 |
T |
|
| Q |
281 |
---gtctctccttttatgtctactttgcacatgcaaaaattcatttgcaatacattccaatgctctaactgtcagcgatctgtttctagtgctttgtctc |
377 |
Q |
| |
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|||| ||||||| || || || |||||||||| ||||||||||| ||| ||||||||||||||||||||| | ||| |||||| |||| |||||| |
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| T |
46630849 |
gatgtctttccttttttgcctctttggcacatgcaagaattcatttgctatatattccaatgctctaactgtcaatggtctttttctattgctctgtctc |
46630750 |
T |
|
| Q |
378 |
ctcggatttatatcagcctgtttttccaaagaatcaacatcacaaggtgttct |
430 |
Q |
| |
|
|||||||||||||||| ||||| |||||| ||| ||||||||||||| ||||| |
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|
| T |
46630749 |
ctcggatttatatcaggctgttgttccaacgaaccaacatcacaaggagttct |
46630697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 196 - 424
Target Start/End: Complemental strand, 46620440 - 46620206
Alignment:
| Q |
196 |
tcccatgatctgaacaatgacgacgcagcattgtttcacctcttgtatgagccttgccgcaaggattgaaaggatcttagtgtgtgt------ctctcct |
289 |
Q |
| |
|
||||||||||||||||| |||| |||||||| ||| |||| |||| ||||||||| |||||||||||||||||||| |||||| | || || | |
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| T |
46620440 |
tcccatgatctgaacaacaacgatgcagcattattttgcctcatgtacgagccttgcggcaaggattgaaaggatcttggtgtgtctggatatctttctt |
46620341 |
T |
|
| Q |
290 |
tttatgtctactttgcacatgcaaaaattcatttgcaatacattccaatgctctaactgtcagcgatctgtttctagtgctttgtctcctcggatttata |
389 |
Q |
| |
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||| ||||| || ||||||||| ||||||||||| |||||||||||||||||||| || | | |||||| |||| ||| |||||||||||||| ||| |
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| T |
46620340 |
tttctgtctctttggcacatgcaggaattcatttgctatacattccaatgctctaacggttaagggtctgttcctagagctctgtctcctcggattcata |
46620241 |
T |
|
| Q |
390 |
tcagcctgtttttccaaagaatcaacatcacaagg |
424 |
Q |
| |
|
|||| ||||| |||||||||| ||||||||||||| |
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| T |
46620240 |
tcaggctgttgttccaaagaaccaacatcacaagg |
46620206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 172 - 424
Target Start/End: Complemental strand, 46639182 - 46638924
Alignment:
| Q |
172 |
tttcttcttgttctaaaactgcattcccatgatctgaacaatgacgacgcagcattgtttcacctcttgtatgagccttgccgcaaggattgaaaggatc |
271 |
Q |
| |
|
|||||||||| |||||| || | ||||||||||||||||| | | |||||||| ||| |||| |||| ||||||||| ||||||||||||||||| |
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| T |
46639182 |
tttcttcttgcgctaaaattgtagtcccatgatctgaacaacaataatgcagcattattttgcctcatgtacgagccttgcgacaaggattgaaaggatc |
46639083 |
T |
|
| Q |
272 |
ttagtgtgt------gtctctccttttatgtctactttgcacatgcaaaaattcatttgcaatacattccaatgctctaactgtcagcgatctgtttcta |
365 |
Q |
| |
|
|| |||||| |||| || |||| ||||| || ||||||||| ||||||||||| |||||||||||||||||||| || | | |||||| ||| |
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| T |
46639082 |
ttggtgtgtctggatgtctttctttttctgtctctttggcacatgcaggaattcatttgctatacattccaatgctctaacggttaagggtctgttccta |
46638983 |
T |
|
| Q |
366 |
gtgctttgtctcctcggatttatatcagcctgtttttccaaagaatcaacatcacaagg |
424 |
Q |
| |
|
| ||| |||||||||||||| ||||||| ||||| |||||||||| ||||||||||||| |
|
|
| T |
46638982 |
gagctctgtctcctcggattcatatcaggctgttgttccaaagaaccaacatcacaagg |
46638924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 172 - 418
Target Start/End: Original strand, 15767970 - 15768216
Alignment:
| Q |
172 |
tttcttcttgttctaaaactgcattcccatgatctgaacaatgacgacgcagcattgtttcacctcttgtatgagccttgccgcaaggattgaaaggatc |
271 |
Q |
| |
|
||||||||||| ||||||||| ||| |||||||||||||||||| || |||| || ||| |||| ||||| ||| |||||||||||||||||| |
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|
| T |
15767970 |
tttcttcttgtgctaaaactgaattaccatgatctgaacaatgatga------attgatttgccttttgtttgagcactgcagcaaggattgaaaggatc |
15768063 |
T |
|
| Q |
272 |
ttagtgtgt------gtctctccttttatgtctactttgcacatgcaaaaattcatttgcaatacattccaatgctctaactgtcagcgatctgtttcta |
365 |
Q |
| |
|
|| ||||| |||| || |||| ||||| |||| || |||| |||||||||| |||||||| |||||||||||||||| || |||||||||| |
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|
| T |
15768064 |
ttcatgtgtctggatgtctttctttttttgtctcttttgtacgtgcaggtattcatttgctatacattctaatgctctaactgtcaacggtctgtttcta |
15768163 |
T |
|
| Q |
366 |
gtgctttgtctcctcggatttatatcagcctgtttttccaaagaatcaacatc |
418 |
Q |
| |
|
|||||||||| ||| ||||||||||||| ||||||||||||| || ||||||| |
|
|
| T |
15768164 |
gtgctttgtcgcctaggatttatatcaggctgtttttccaaataaccaacatc |
15768216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 191 - 273
Target Start/End: Complemental strand, 1537937 - 1537855
Alignment:
| Q |
191 |
tgcattcccatgatctgaacaatgacgacgcagcattgtttcacctcttgtatgagccttgccgcaaggattgaaaggatctt |
273 |
Q |
| |
|
|||||||||||||||| ||||| ||||| ||| |||||||| ||||| || ||| ||||| |||||||||||||||||||| |
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|
| T |
1537937 |
tgcattcccatgatcttaacaaagacgaagcatcattgttttgcctctcatacgaggcttgcggcaaggattgaaaggatctt |
1537855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 358 - 423
Target Start/End: Complemental strand, 1537797 - 1537732
Alignment:
| Q |
358 |
tgtttctagtgctttgtctcctcggatttatatcagcctgtttttccaaagaatcaacatcacaag |
423 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||||| || | ||||||||||||||||||||||| |
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|
| T |
1537797 |
tgtttctagtgatttgtctccagagatttatatcagcatgctgttccaaagaatcaacatcacaag |
1537732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 172 - 213
Target Start/End: Original strand, 18373850 - 18373891
Alignment:
| Q |
172 |
tttcttcttgttctaaaactgcattcccatgatctgaacaat |
213 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||||||||||| |
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|
| T |
18373850 |
tttcttcttgtgctaaaactgcagtcccatgatctgaacaat |
18373891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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