View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10889_low_2 (Length: 274)
Name: NF10889_low_2
Description: NF10889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10889_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 11)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 18 - 248
Target Start/End: Complemental strand, 31257869 - 31257639
Alignment:
| Q |
18 |
atagctaaatcacttggtaagaaagattggaacttcgacactgatccatgcagcaacaaacctaactgggctacacctacgcctccaggtcacagattgc |
117 |
Q |
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| T |
31257869 |
atagctaaatcacttggtaagaaagattggaacttcgacactgatccatgcagcaacaaacctaactgggctacacctacgcctccaggtcacagattgc |
31257770 |
T |
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| Q |
118 |
aactcgtagtgaacaatgtcacctgcaactgcagtgttgctggtgacaacttctgccatgttgtttcaatgtaagtctattttcaatggaattgaccgtt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
31257769 |
aactcgtagtgaacaatgtcacctgcaactgcagtgttgctggtgacaacttctgccatgttgtttcaatgtaagtctattttccatggaattgaccgtt |
31257670 |
T |
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| Q |
218 |
tgctatcggtacttctaatcaattggtttga |
248 |
Q |
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| T |
31257669 |
tgctatcggtacttctaatcaattggtttga |
31257639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 18 - 201
Target Start/End: Complemental strand, 31295062 - 31294873
Alignment:
| Q |
18 |
atagctaaatcacttggtaagaaagattggaacttcgacactgatccatgcagcaacaaacctaactgggctaca------cctacgcctccaggtcaca |
111 |
Q |
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| T |
31295062 |
atagctaaatcacttggtaagaatgattggaacttcgacattgatccatgtagcaaccaacctaactgggctacaccgaagcctgcgcatcccagtccca |
31294963 |
T |
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| Q |
112 |
gattgcaactcgtagtgaacaatgtcacctgcaactgcagtgttgctggtgacaacttctgccatgttgtttcaatgtaagtctattttc |
201 |
Q |
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| T |
31294962 |
gattgaatatcgtagagaacaatgtcacttgcaactgcagtatttctgctgacaacttctgccatgttgttgaaatgtaagtctattttc |
31294873 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 18 - 201
Target Start/End: Complemental strand, 31310161 - 31309978
Alignment:
| Q |
18 |
atagctaaatcacttggtaagaaagattggaacttcgacactgatccatgcagcaacaaacctaactgggctacacctacgcctccaggtcacagattgc |
117 |
Q |
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|||||||||||||||||||||| |||||||||||| || |||||||||||||||||| |||||||||| || |||||||||| ||| ||||||| |
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| T |
31310161 |
atagctaaatcacttggtaagacggattggaacttcagcattgatccatgcagcaacaattctaactgggccacgcctacgcctcggattcagagattgc |
31310062 |
T |
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| Q |
118 |
aactcgtagtgaacaatgtcacctgcaactgcagtgttgctggtgacaacttctgccatgttgtttcaatgtaagtctattttc |
201 |
Q |
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| T |
31310061 |
aagtcgtagtgaacattgttttttgtaactgcagtgttgctgatgacaacttctgccatgttgttgaaatgtaagtctattttc |
31309978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 18 - 200
Target Start/End: Original strand, 31416438 - 31416608
Alignment:
| Q |
18 |
atagctaaatcacttggtaagaaagattggaacttcgacactgatccatgcagcaacaaacctaactgggctacacctacgcctccaggtcacagattgc |
117 |
Q |
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||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||| ||||||||||||| ||| |||||| || || || |
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| T |
31416438 |
atagctaaatcacttggtaagaaggattggaactttgacattgatccatgcagcaataaacctaactgggttacgcctacgatacc--------gaatg- |
31416528 |
T |
|
| Q |
118 |
aactcgtagtgaacaatgtcacctgcaactgcagtgttgctggtgacaacttctgccatgttgtttcaatgtaagtctatttt |
200 |
Q |
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|||||| ||||||||| | || |||||| ||||||||||||||||||||||||||||||| ||||||||||| |||| |
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| T |
31416529 |
---tcgtagagaacaatgtaatttgtaactgctctgttgctggtgacaacttctgccatgttgttgaaatgtaagtctctttt |
31416608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 92
Target Start/End: Complemental strand, 31376790 - 31376716
Alignment:
| Q |
18 |
atagctaaatcacttggtaagaaagattggaacttcgacactgatccatgcagcaacaaacctaactgggctaca |
92 |
Q |
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||||| ||||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||| ||||| |
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| T |
31376790 |
atagccaaatcacttgggaagaaggattggaacttcgacattgatccatgcagcaacaaacctaactggtctaca |
31376716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 129 - 195
Target Start/End: Complemental strand, 31388996 - 31388930
Alignment:
| Q |
129 |
aacaatgtcacctgcaactgcagtgttgctggtgacaacttctgccatgttgtttcaatgtaagtct |
195 |
Q |
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| T |
31388996 |
aacaatgtcacctgcaactgctctgttgccggtgacaacttctgccatgttgtttcaatgtaagtct |
31388930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 31362618 - 31362550
Alignment:
| Q |
18 |
atagctaaatcacttggtaagaaagattggaacttcgacactgatccatgcagcaacaaacctaactgg |
86 |
Q |
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||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||| |||||||||||| |
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| T |
31362618 |
atagctaaatcacttggtaagaaggattggaactttgacattgatccatgcagcaataaacctaactgg |
31362550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 31283643 - 31283579
Alignment:
| Q |
18 |
atagctaaatcacttggtaagaaagattggaacttcgacactgatccatgcagcaacaaacctaa |
82 |
Q |
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||||| ||||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||| |
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| T |
31283643 |
atagccaaatcacttgggaagaaggattggaacttcgacattgatccatgcagcaacaaacctaa |
31283579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 31389080 - 31389012
Alignment:
| Q |
18 |
atagctaaatcacttggtaagaaagattggaacttcgacactgatccatgcagcaacaaacctaactgg |
86 |
Q |
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|||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||| |||| |
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| T |
31389080 |
atagctgaatcacttggtaagaaagattggaacttcgacatcgatccttgcagcaaccaacctatctgg |
31389012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 121 - 195
Target Start/End: Complemental strand, 31362527 - 31362453
Alignment:
| Q |
121 |
tcgtagtgaacaatgtcacctgcaactgcagtgttgctggtgacaacttctgccatgttgtttcaatgtaagtct |
195 |
Q |
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| T |
31362527 |
tcgtagagaataatgtcacctgtgactgctctattcctggtgacaacttctgccatgttgttgcaatgtaagtct |
31362453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 128 - 201
Target Start/End: Complemental strand, 31283560 - 31283487
Alignment:
| Q |
128 |
gaacaatgtcacctgcaactgcagtgttgctggtgacaacttctgccatgttgtttcaatgtaagtctattttc |
201 |
Q |
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|||||| ||| |||| |||||| ||| || ||||||||||| |||||||||||| ||||||||||| ||||| |
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| T |
31283560 |
gaacaaagtcgcctgtaactgctctgtggccggtgacaacttttgccatgttgttgaaatgtaagtctcttttc |
31283487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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